Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACK2I0_RS11370 Genome accession   NZ_CP176635
Coordinates   2454069..2455121 (-) Length   350 a.a.
NCBI ID   WP_044983107.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain SFAD33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449069..2460121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I0_RS11335 - 2449099..2449679 (-) 581 Protein_2215 DUF1989 domain-containing protein -
  ACK2I0_RS11340 - 2449824..2450069 (-) 246 WP_411335586.1 HPr family phosphocarrier protein -
  ACK2I0_RS11345 - 2450247..2450876 (+) 630 WP_411335588.1 DNA-3-methyladenine glycosylase family protein -
  ACK2I0_RS11350 - 2450963..2451157 (-) 195 WP_411338412.1 helix-turn-helix domain-containing protein -
  ACK2I0_RS11355 - 2451291..2451524 (+) 234 WP_411335590.1 hypothetical protein -
  ACK2I0_RS11360 rny 2451793..2453352 (-) 1560 WP_044983108.1 ribonuclease Y -
  ACK2I0_RS11365 - 2453443..2454072 (-) 630 WP_411335592.1 regulatory protein RecX -
  ACK2I0_RS11370 recA 2454069..2455121 (-) 1053 WP_044983107.1 recombinase RecA Machinery gene
  ACK2I0_RS11375 glgA 2455365..2456807 (-) 1443 WP_411335593.1 glycogen synthase GlgA -
  ACK2I0_RS11380 spo0A 2456974..2457771 (-) 798 WP_028528083.1 sporulation transcription factor Spo0A -
  ACK2I0_RS11385 spoIVB 2458016..2459218 (-) 1203 WP_411335594.1 SpoIVB peptidase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37784.34 Da        Isoelectric Point: 5.3460

>NTDB_id=1081776 ACK2I0_RS11370 WP_044983107.1 2454069..2455121(-) (recA) [Ruminococcus gauvreauii strain SFAD33]
MVKEDKLKALDAALVQIEKNYGKGAVMKLGDSGINMNVETIPTGSLSLDVALGLGGIPKGRVVEIYGPESSGKTTVALHM
VAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSGEQALEITETMVRSGAVDIVIVDSVAALVPRAEIDGEM
GDSHVGLQARLMSQALRKLTSVIGKSGCVVIFINQLREKVGVMYGSPEVTTGGRALKFYSSIRMDVRRIEAIKQSGEVIG
NRTRIKVVKNKIAPPFKEAEFDIMFGKGISREADILELAASSGVIQKSGAWFAYDNAKIGQGRENAKTYLMEHPEVMQEV
EQKVRAYYGLNGAEKSETPQEPKTAEIETE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1081776 ACK2I0_RS11370 WP_044983107.1 2454069..2455121(-) (recA) [Ruminococcus gauvreauii strain SFAD33]
ATGGTAAAGGAAGATAAATTAAAAGCATTGGACGCGGCACTCGTACAGATAGAAAAAAACTACGGAAAAGGTGCGGTGAT
GAAACTGGGGGATTCAGGCATCAACATGAATGTGGAGACGATACCGACAGGATCCCTGAGCCTCGATGTGGCACTGGGGC
TGGGCGGCATACCAAAGGGGCGCGTGGTGGAGATCTACGGACCGGAATCGAGCGGTAAGACTACCGTGGCACTCCATATG
GTAGCGGAGGTACAAAAGAGAGGCGGGATCGCAGGATTTATCGATGCAGAGCATGCGCTTGATCCGGTATATGCAAAAAA
TATTGGCGTTGATATCGACAATCTTTATATCTCACAGCCGGACAGCGGTGAGCAGGCACTTGAGATCACAGAGACGATGG
TGCGTTCAGGAGCGGTAGATATTGTGATCGTGGATTCTGTCGCGGCTCTTGTTCCGAGAGCTGAGATTGACGGTGAGATG
GGAGATTCTCATGTTGGTCTTCAGGCCCGTCTCATGTCACAGGCGCTCAGAAAATTAACTTCCGTGATCGGAAAATCAGG
CTGTGTTGTTATTTTTATCAATCAGCTGCGTGAGAAGGTAGGAGTGATGTACGGCAGTCCGGAAGTCACCACGGGCGGAC
GTGCGCTGAAGTTTTACTCATCCATCCGTATGGATGTGCGCCGGATAGAGGCGATCAAGCAGAGCGGTGAGGTCATCGGA
AACCGTACACGTATCAAAGTTGTTAAGAATAAAATTGCACCGCCGTTTAAGGAGGCGGAATTTGACATTATGTTTGGAAA
GGGGATTTCCAGAGAGGCGGATATCCTGGAGCTGGCTGCAAGCAGCGGTGTGATTCAGAAGAGCGGGGCATGGTTCGCCT
ACGACAATGCGAAGATCGGACAGGGGCGTGAAAATGCGAAGACATATCTGATGGAGCATCCGGAGGTCATGCAGGAGGTG
GAGCAGAAGGTAAGAGCGTACTACGGCCTGAATGGCGCAGAGAAATCAGAGACACCTCAGGAGCCGAAAACAGCGGAGAT
TGAGACAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

61.032

99.714

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

62.832

96.857

0.609
  recA Streptococcus pneumoniae TIGR4

60.92

99.429

0.606
  recA Streptococcus pneumoniae Rx1

60.92

99.429

0.606
  recA Streptococcus pneumoniae R6

60.92

99.429

0.606
  recA Streptococcus pneumoniae D39

60.92

99.429

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.526

93.429

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

93.429

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.429

0.591
  recA Pseudomonas stutzeri DSM 10701

61.607

96

0.591
  recA Streptococcus pyogenes NZ131

62.727

94.286

0.591
  recA Neisseria gonorrhoeae strain FA1090

61.862

95.143

0.589
  recA Neisseria gonorrhoeae MS11

61.862

95.143

0.589
  recA Neisseria gonorrhoeae MS11

61.862

95.143

0.589
  recA Helicobacter pylori strain NCTC11637

59.942

97.714

0.586
  recA Streptococcus mitis SK321

59.249

98.857

0.586
  recA Streptococcus mitis NCTC 12261

58.96

98.857

0.583
  recA Helicobacter pylori 26695

59.649

97.714

0.583
  recA Acinetobacter baylyi ADP1

58.213

99.143

0.577
  recA Acinetobacter baumannii D1279779

59.064

97.714

0.577
  recA Glaesserella parasuis strain SC1401

61.585

93.714

0.577
  recA Vibrio cholerae strain A1552

62.112

92

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

92

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.337

94.857

0.563
  recA Ralstonia pseudosolanacearum GMI1000

61.587

90

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

92.571

0.54

Multiple sequence alignment