Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACK2I2_RS12990 Genome accession   NZ_CP176629
Coordinates   2688334..2689410 (+) Length   358 a.a.
NCBI ID   WP_004842695.1    Uniprot ID   A0A829NGY6
Organism   Mediterraneibacter gnavus strain SFAD61     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2683334..2694410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I2_RS12970 - 2683736..2684821 (+) 1086 WP_378959677.1 transposase -
  ACK2I2_RS12975 - 2684982..2686139 (-) 1158 WP_118006357.1 IS630 family transposase -
  ACK2I2_RS12980 - 2686555..2687037 (+) 483 WP_054337101.1 hypothetical protein -
  ACK2I2_RS12985 - 2687234..2687767 (+) 534 WP_101875054.1 hypothetical protein -
  ACK2I2_RS12990 recA 2688334..2689410 (+) 1077 WP_004842695.1 recombinase RecA Machinery gene
  ACK2I2_RS12995 - 2689414..2690028 (+) 615 WP_054337103.1 regulatory protein RecX -
  ACK2I2_RS13000 rny 2690144..2691676 (+) 1533 WP_373120411.1 ribonuclease Y -
  ACK2I2_RS13005 - 2691772..2692317 (+) 546 WP_004842701.1 NUDIX hydrolase -
  ACK2I2_RS13010 - 2692376..2692909 (+) 534 WP_242828411.1 stage II sporulation protein M -
  ACK2I2_RS13015 - 2692906..2694225 (-) 1320 WP_101875052.1 oligosaccharide flippase family protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39023.83 Da        Isoelectric Point: 5.1364

>NTDB_id=1081648 ACK2I2_RS12990 WP_004842695.1 2688334..2689410(+) (recA) [Mediterraneibacter gnavus strain SFAD61]
MASDEKKKALDAAIAKLEKDFGKGTVMKLGEGSHVAVETVPTGCLSLDLALGLGGVPKGRVIEVYGPESSGKTTVTLHMI
AEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDELYISQPDSGDQALEIAETMVRSGAVDIIVIDSVAALVPKQEIEGDMG
DSHVGLQARLMSQALRKLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGN
RTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLAVGIDLVKKSGAWYAYEGEKIGQGRENAKAYLTSHPEVMEELD
RKVRQHYHLIEGEEEVKESDLKLTPKEEQMELSIEGEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1081648 ACK2I2_RS12990 WP_004842695.1 2688334..2689410(+) (recA) [Mediterraneibacter gnavus strain SFAD61]
ATGGCAAGTGATGAAAAGAAAAAAGCGCTGGATGCGGCGATTGCAAAGTTAGAGAAGGATTTTGGAAAAGGTACTGTGAT
GAAGCTGGGAGAGGGCAGTCATGTTGCTGTAGAGACGGTTCCTACAGGGTGTCTGAGTCTAGATCTGGCACTGGGACTTG
GCGGTGTTCCAAAGGGACGTGTGATTGAGGTTTACGGTCCGGAGTCCAGTGGTAAGACGACAGTGACACTCCACATGATC
GCAGAAGTACAAAAGAGAGGCGGGATTGCAGGATTTATTGATGCAGAGCATGCTCTGGATCCTGTTTATGCGAAGAAGAT
CGGAGTAGATATTGATGAATTATATATTTCACAGCCTGACAGCGGAGATCAGGCTCTGGAGATTGCTGAGACGATGGTGC
GCTCCGGAGCAGTGGATATTATTGTGATTGACTCTGTTGCGGCCCTCGTGCCAAAGCAGGAGATCGAAGGAGATATGGGA
GACAGTCATGTCGGCCTGCAGGCGAGACTGATGTCGCAGGCACTGCGTAAGCTGACACCGGTCATCAGCAAATCCAACTG
TGTGGTTATCTTTATCAACCAGCTCCGTGAAAAGGTAGGCGTAATGTTTGGAAATCCAGAGACAACGACAGGTGGACGCG
CATTGAAGTTCTACGCTTCTGTTCGTATGGATGTCCGCAGGATCGAGACGCTGAAGCAGAGCGGAGAGATGGTCGGCAAC
AGAACCCGCATCAAGATCGTGAAGAATAAGATTGCGCCTCCGTTTAAAGAGGCAGAGTTTGATATCATGTTTGGAAAAGG
AATCTCCAAAGAAGGAGATGTTCTGGATCTGGCAGTTGGTATTGATCTTGTCAAGAAGAGTGGTGCGTGGTATGCATATG
AAGGAGAGAAGATCGGACAGGGACGTGAGAATGCAAAAGCATATCTGACCAGTCATCCGGAGGTGATGGAGGAGCTGGAC
AGAAAAGTACGCCAGCACTATCATCTGATTGAAGGAGAGGAAGAGGTAAAAGAGAGTGATCTGAAGCTGACTCCAAAAGA
GGAACAAATGGAACTGTCGATCGAGGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829NGY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

62.5

98.324

0.615
  recA Streptococcus pneumoniae D39

62.5

98.324

0.615
  recA Streptococcus pneumoniae R6

62.5

98.324

0.615
  recA Streptococcus pneumoniae TIGR4

62.5

98.324

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

67.385

90.782

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

97.207

0.603
  recA Streptococcus mutans UA159

59.777

100

0.598
  recA Streptococcus mitis SK321

63.772

93.296

0.595
  recA Streptococcus mitis NCTC 12261

63.473

93.296

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.179

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

91.899

0.584
  recA Lactococcus lactis subsp. cremoris KW2

62.575

93.296

0.584
  recA Streptococcus pyogenes NZ131

63.11

91.62

0.578
  recA Acinetobacter baumannii D1279779

63.777

90.223

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

89.944

0.57
  recA Vibrio cholerae strain A1552

63.354

89.944

0.57
  recA Neisseria gonorrhoeae MS11

60.059

94.413

0.567
  recA Neisseria gonorrhoeae strain FA1090

60.059

94.413

0.567
  recA Neisseria gonorrhoeae MS11

60.059

94.413

0.567
  recA Acinetobacter baylyi ADP1

62.848

90.223

0.567
  recA Pseudomonas stutzeri DSM 10701

58.501

96.927

0.567
  recA Helicobacter pylori 26695

61.774

91.341

0.564
  recA Helicobacter pylori strain NCTC11637

61.774

91.341

0.564
  recA Glaesserella parasuis strain SC1401

62.112

89.944

0.559
  recA Ralstonia pseudosolanacearum GMI1000

63.871

86.592

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

89.944

0.531

Multiple sequence alignment