Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CLC19222_RS00755 Genome accession   NZ_CP176604
Coordinates   131857..132894 (-) Length   345 a.a.
NCBI ID   WP_039617275.1    Uniprot ID   Q93R37
Organism   Campylobacter lari subsp. concheus strain RM19222     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126857..137894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19222_RS00720 (CLC19222_00142) - 127236..127397 (+) 162 WP_039667884.1 highly acidic protein -
  CLC19222_RS00725 (CLC19222_00143) - 127400..128710 (+) 1311 WP_257397362.1 MFS transporter -
  CLC19222_RS00730 (CLC19222_00144) - 128679..129155 (-) 477 WP_214098848.1 cysteine permease -
  CLC19222_RS00735 (CLC19222_00145) - 129264..129647 (+) 384 WP_039667887.1 group III truncated hemoglobin -
  CLC19222_RS00740 (CLC19222_00146) - 129662..130345 (-) 684 WP_257397361.1 AMIN domain-containing protein -
  CLC19222_RS00745 (CLC19222_00147) - 130335..130511 (-) 177 WP_173787953.1 hypothetical protein -
  CLC19222_RS00750 (CLC19222_00148) eno 130613..131857 (-) 1245 WP_149061958.1 phosphopyruvate hydratase -
  CLC19222_RS00755 (CLC19222_00149) recA 131857..132894 (-) 1038 WP_039617275.1 recombinase RecA Machinery gene
  CLC19222_RS00760 (CLC19222_00150) - 133005..133868 (+) 864 WP_257404769.1 menaquinone biosynthesis family protein -
  CLC19222_RS00765 (CLC19222_00151) fliQ 133895..134161 (+) 267 WP_012660903.1 flagellar biosynthesis protein FliQ -
  CLC19222_RS00770 (CLC19222_00152) - 134158..134934 (+) 777 WP_257404770.1 UDP-N-acetylmuramate dehydrogenase -
  CLC19222_RS00775 (CLC19222_00153) - 134927..135577 (-) 651 WP_257404773.1 hypothetical protein -
  CLC19222_RS00780 (CLC19222_00154) - 135577..136335 (-) 759 WP_257404774.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CLC19222_RS00785 (CLC19222_00155) - 136375..137553 (-) 1179 WP_257397355.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37314.72 Da        Isoelectric Point: 5.1908

>NTDB_id=1081471 CLC19222_RS00755 WP_039617275.1 131857..132894(-) (recA) [Campylobacter lari subsp. concheus strain RM19222]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEKIDSIPTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGN
RVKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQGRENAKAFLKENPAIADEIT
QAIQNSIGIDSMILGAKEDDEEGEE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1081471 CLC19222_RS00755 WP_039617275.1 131857..132894(-) (recA) [Campylobacter lari subsp. concheus strain RM19222]
ATGGATGATAATAAAAGAAAATCACTTGATGCAGCTTTAAAAAGTCTTGATAAAACTTTTGGAAAAGGCACTATTTTAAG
ACTTGGCGATAAAGAAGTTGAAAAAATTGATTCTATTCCTACAGGTTCTGTTGGACTTGATTTAGCTTTAGGGATTGGTG
GGGTTCCAAAAGGAAGAATTATAGAAATTTACGGACCTGAAAGTTCAGGTAAAACTACACTTACCTTACACATCATAGCA
GAATGTCAAAAAAAAGGCGGAGTTTGTGCGTTTATCGATGCTGAACACGCTCTTGATGTAAGATATGCAAAAAATTTAGG
TGTTGATACAGAAAATCTTTACATCTCTCAACCAGATTTTGGAGAGCAAGCTTTAGAAATCGTTGAAACTATAGCAAGAA
GTGGAGCTATTGATCTAATAGTAGTAGATAGTGTTGCTGCACTTACTCCAAAAGCAGAAATTGAAGGTGATATGGGAGAT
CAACATGTAGGTCTTCAAGCAAGATTAATGAGCCAAGCTTTAAGAAAATTAACCGGTATCGTTCATAAAATGAACACTAC
TGTAATTTTCATCAATCAAATTCGTATGAAAATAGGTATGATGGGTTATGGAACACCTGAAACAACTACCGGTGGAAATG
CTTTAAAATTTTATGCTTCGGTGCGTTTAGATGTAAGAAAAACAGCTACTTTAAAACAAAATGATGAACCTATTGGAAAC
CGCGTTAAGGTAAAAGTGGCTAAAAATAAAGTAGCCCCTCCTTTTAAACAGGCTGAATTTGACGTGATGTTTGGTGAGGG
TGTAAGTCGCGAAGGTGAACTAATAGACTATGGTGTAAAACTTGATATTATTGATAAAAGTGGTGCATGGTTTTCTTACA
AGGCTTCTAAACTTGGCCAAGGTAGAGAAAATGCCAAAGCCTTTTTAAAAGAAAATCCAGCTATTGCAGATGAAATTACT
CAAGCTATACAAAACTCAATCGGTATAGATAGTATGATTTTGGGTGCAAAAGAAGACGATGAAGAAGGAGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q93R37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

91.304

100

0.913
  recA Helicobacter pylori 26695

78.743

96.812

0.762
  recA Helicobacter pylori strain NCTC11637

78.443

96.812

0.759
  recA Neisseria gonorrhoeae MS11

64.638

100

0.646
  recA Neisseria gonorrhoeae MS11

64.638

100

0.646
  recA Neisseria gonorrhoeae strain FA1090

64.638

100

0.646
  recA Acinetobacter baylyi ADP1

62.5

99.71

0.623
  recA Glaesserella parasuis strain SC1401

62.682

99.42

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

96.232

0.617
  recA Acinetobacter baumannii D1279779

64.22

94.783

0.609
  recA Pseudomonas stutzeri DSM 10701

63.142

95.942

0.606
  recA Ralstonia pseudosolanacearum GMI1000

63.333

95.652

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

63.415

95.072

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.654

93.913

0.588
  recA Vibrio cholerae strain A1552

62.654

93.913

0.588
  recA Streptococcus pyogenes NZ131

59.394

95.652

0.568
  recA Streptococcus mitis NCTC 12261

58.663

95.362

0.559
  recA Streptococcus pneumoniae Rx1

58.359

95.362

0.557
  recA Streptococcus pneumoniae D39

58.359

95.362

0.557
  recA Streptococcus pneumoniae R6

58.359

95.362

0.557
  recA Streptococcus pneumoniae TIGR4

58.359

95.362

0.557
  recA Streptococcus mitis SK321

58.055

95.362

0.554
  recA Streptococcus mutans UA159

57.704

95.942

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

57.798

94.783

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.143

95.362

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

93.913

0.533

Multiple sequence alignment