Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AACH40_RS05025 Genome accession   NZ_AP029021
Coordinates   1054337..1055407 (+) Length   356 a.a.
NCBI ID   WP_169492573.1    Uniprot ID   A0A7Y0G9S1
Organism   Novosphingobium olei strain DW067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049337..1060407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH40_RS05010 (NSDW_09920) smpB 1050396..1050884 (+) 489 WP_169492570.1 SsrA-binding protein SmpB -
  AACH40_RS05015 (NSDW_09930) - 1051007..1051567 (+) 561 WP_338644444.1 DUF2062 domain-containing protein -
  AACH40_RS05020 (NSDW_09940) - 1051683..1054073 (+) 2391 WP_338645926.1 ATP-binding protein -
  AACH40_RS05025 (NSDW_09950) recA 1054337..1055407 (+) 1071 WP_169492573.1 recombinase RecA Machinery gene
  AACH40_RS05030 (NSDW_09960) - 1055649..1056497 (+) 849 WP_338644445.1 methyltransferase domain-containing protein -
  AACH40_RS05035 (NSDW_09970) alaS 1056556..1059201 (+) 2646 WP_338644446.1 alanine--tRNA ligase -
  AACH40_RS05040 (NSDW_09980) - 1059241..1060179 (+) 939 WP_338644447.1 energy transducer TonB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38468.94 Da        Isoelectric Point: 5.8352

>NTDB_id=108134 AACH40_RS05025 WP_169492573.1 1054337..1055407(+) (recA) [Novosphingobium olei strain DW067]
MAAQLKLIQEGKDKDMDRQKALDAALAQIDRAFGKGSAMRLGQKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEVYGPE
SSGKTTLALHVIAEAQKNGGTAAFVDAEHALDPVYAKKLGVDIDNLIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDEITGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKNY
LREHKEVCDRLEAAIRSRTEQVSEGLMAGPDADDDV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=108134 AACH40_RS05025 WP_169492573.1 1054337..1055407(+) (recA) [Novosphingobium olei strain DW067]
ATGGCGGCGCAGCTCAAGCTCATTCAGGAAGGTAAAGACAAGGACATGGACCGTCAGAAGGCGCTCGATGCGGCCCTGGC
CCAGATCGACCGGGCATTCGGCAAGGGTTCGGCCATGCGGCTGGGCCAGAAGGAAGCGATGCAGGTCGAAGCGATTTCGA
CCGGGTCGCTCGGTCTGGACATCGCGCTTGGCGTCGGTGGCCTGCCACGTGGCCGCGTGATCGAAGTTTACGGGCCGGAA
AGCTCGGGCAAGACCACGCTTGCGCTGCACGTGATCGCCGAAGCGCAGAAGAACGGCGGCACGGCAGCGTTCGTCGATGC
CGAACACGCGCTCGATCCGGTCTATGCCAAGAAGCTGGGCGTCGATATCGACAACCTGATCGTCTCGCAGCCCGACACCG
GCGAACAGGCGCTCGAGATCACCGATACGCTGGTGCGCTCGAACGCGATCGACGTGCTGGTGGTGGACTCGGTCGCCGCG
CTCGTCCCCCGCGCCGAAATCGAAGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCTCGCCTGATGTCGCAGTCCTT
GCGCAAGCTGACCGGCTCGATCAGCCGCTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGA
TGTACGGCAATCCCGAGACGACGACGGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTCCGTCTCGACATCCGCCGCACC
GGGCAGATCAAGGATCGTGACGAGATCACCGGCAACGCCACCCGCGTGAAGGTCGTGAAGAACAAGGTCGCCCCGCCGTT
CCGGCAGGTCGAATTCGACATCATGTACGGCGAAGGCATCTCCAAGATCGGCGAGATCCTCGATCTGGGCGTCAAGGCCG
GCCTCGTCGAAAAGTCGGGCGCCTGGTTCAGCTACGACAGCATCCGCATCGGGCAGGGGCGTGAAAACGCGAAGAACTAC
CTGCGCGAACACAAGGAAGTTTGCGACCGGCTCGAAGCTGCGATCCGCAGCCGCACCGAGCAGGTCTCCGAAGGTCTGAT
GGCCGGTCCGGACGCGGACGACGACGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0G9S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.235

95.506

0.652
  recA Vibrio cholerae strain A1552

68.944

90.449

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.944

90.449

0.624
  recA Neisseria gonorrhoeae MS11

68.634

90.449

0.621
  recA Neisseria gonorrhoeae MS11

68.634

90.449

0.621
  recA Neisseria gonorrhoeae strain FA1090

68.634

90.449

0.621
  recA Glaesserella parasuis strain SC1401

69.062

89.888

0.621
  recA Acinetobacter baylyi ADP1

67.593

91.011

0.615
  recA Helicobacter pylori strain NCTC11637

64.201

94.944

0.61
  recA Acinetobacter baumannii D1279779

66.975

91.011

0.61
  recA Helicobacter pylori 26695

63.905

94.944

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.05

95.787

0.604
  recA Ralstonia pseudosolanacearum GMI1000

69.805

86.517

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

66.875

89.888

0.601
  recA Streptococcus pneumoniae R6

59.605

99.438

0.593
  recA Streptococcus pneumoniae TIGR4

59.605

99.438

0.593
  recA Streptococcus pneumoniae Rx1

59.605

99.438

0.593
  recA Streptococcus pneumoniae D39

59.605

99.438

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.636

92.697

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

64.486

90.169

0.581
  recA Streptococcus pyogenes NZ131

59.767

96.348

0.576
  recA Streptococcus mitis SK321

59.706

95.506

0.57
  recA Streptococcus mutans UA159

58.065

95.787

0.556
  recA Streptococcus mitis NCTC 12261

61.111

91.011

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

91.573

0.551
  recA Lactococcus lactis subsp. cremoris KW2

60

91.292

0.548

Multiple sequence alignment