Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFGDV_RS05380 Genome accession   NZ_CP176528
Coordinates   1120540..1121583 (+) Length   347 a.a.
NCBI ID   WP_136419784.1    Uniprot ID   -
Organism   Noviherbaspirillum sp. ST 5-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115540..1126583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFGDV_RS05360 - 1115736..1117772 (-) 2037 WP_136419787.1 sodium:solute symporter family protein -
  ACFGDV_RS05365 - 1117762..1118046 (-) 285 WP_247869754.1 DUF4212 domain-containing protein -
  ACFGDV_RS05370 - 1118043..1119602 (-) 1560 WP_136419786.1 sensor histidine kinase -
  ACFGDV_RS05375 - 1119611..1120312 (-) 702 WP_136419785.1 response regulator transcription factor -
  ACFGDV_RS05380 recA 1120540..1121583 (+) 1044 WP_136419784.1 recombinase RecA Machinery gene
  ACFGDV_RS05385 recX 1121656..1122111 (+) 456 WP_136419783.1 recombination regulator RecX -
  ACFGDV_RS05390 - 1122407..1122988 (+) 582 WP_136419857.1 DUF2889 domain-containing protein -
  ACFGDV_RS05395 sucC 1123037..1124203 (+) 1167 WP_136419782.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFGDV_RS05400 sucD 1124221..1125102 (+) 882 WP_136419781.1 succinate--CoA ligase subunit alpha -
  ACFGDV_RS05405 - 1125276..1126103 (+) 828 WP_136419780.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37004.23 Da        Isoelectric Point: 5.0548

>NTDB_id=1080716 ACFGDV_RS05380 WP_136419784.1 1120540..1121583(+) (recA) [Noviherbaspirillum sp. ST 5-3]
MDEKKSAQNPDKAKALAAALAQIEKQFGKGSVMRMADGAVAEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQAIAEMQKLGGTCAFIDAEHALDVVYAQKLGVNLSDLLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKVAPPFKEAHFDILYGEGTSREGEILDLGSEAKIVEKSGAWYSYNGERIGQGKDNARNYLKEHP
ELAREIENKVRAALGVPELPPAVAEAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1080716 ACFGDV_RS05380 WP_136419784.1 1120540..1121583(+) (recA) [Noviherbaspirillum sp. ST 5-3]
ATGGACGAAAAGAAATCTGCGCAGAACCCGGATAAGGCAAAGGCGCTCGCAGCGGCGTTGGCGCAAATCGAAAAGCAGTT
CGGCAAGGGCTCCGTGATGCGCATGGCCGATGGCGCCGTGGCAGAAGAAGTGCAAGTGGTATCAACCGGCTCGCTCGGAT
TGGATATTGCACTGGGGGTTGGCGGCTTGCCGCGCGGTCGCGTCGTGGAAATTTACGGACCTGAATCCTCCGGTAAAACG
ACGCTTACCTTGCAAGCAATCGCCGAAATGCAAAAACTCGGCGGCACCTGCGCGTTCATCGACGCCGAGCACGCACTCGA
CGTGGTCTACGCGCAAAAGCTGGGCGTCAATTTGTCGGACCTGCTGATTTCGCAGCCGGATACGGGTGAACAGGCTCTGG
AAATTTGCGATGCACTGGTGCGCTCCGGCAGTGTTGACCTCGTGGTGATCGACTCGGTAGCCGCGCTGACGCCGCGCGCG
GAAATCGAAGGAGATATGGGTGATTCGCTGCCCGGCCTGCAAGCCCGTTTGATGTCGCAAGCGCTGCGTAAACTGACCGG
CAGCATCAATCGTACTAATACGCTGGTAATCTTCATCAACCAGATTCGCATGAAGATCGGTGTTATGTTCGGCAATCCGG
AAACCACGACCGGCGGCAATGCCTTGAAGTTCTATGCCTCCGTTCGTCTCGACATTCGCCGCACCGGCTCCATCAAGTCG
GGTGACGAGGTGATCGGTAACGAAACCAAAGTCAAGGTCGTCAAGAACAAGGTTGCGCCGCCGTTCAAGGAAGCGCATTT
CGATATTCTTTACGGAGAAGGTACGTCTCGCGAAGGCGAAATTCTTGATCTCGGTTCAGAAGCGAAAATCGTCGAGAAAT
CCGGGGCGTGGTACAGCTACAACGGCGAGCGTATCGGCCAAGGCAAGGACAATGCGCGCAATTACCTCAAGGAGCATCCG
GAGCTTGCCCGTGAAATCGAGAACAAGGTACGCGCTGCGCTTGGCGTGCCTGAGCTTCCGCCCGCCGTGGCAGAGGCCGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.987

90.49

0.778
  recA Neisseria gonorrhoeae MS11

74.54

93.948

0.7
  recA Neisseria gonorrhoeae MS11

74.54

93.948

0.7
  recA Neisseria gonorrhoeae strain FA1090

74.54

93.948

0.7
  recA Vibrio cholerae strain A1552

71.217

97.118

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.217

97.118

0.692
  recA Glaesserella parasuis strain SC1401

70.997

95.389

0.677
  recA Acinetobacter baumannii D1279779

70.359

96.254

0.677
  recA Pseudomonas stutzeri DSM 10701

71.779

93.948

0.674
  recA Acinetobacter baylyi ADP1

71.166

93.948

0.669
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.066

96.254

0.646
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

93.948

0.62
  recA Helicobacter pylori 26695

64.264

95.965

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

64.848

95.101

0.617
  recA Helicobacter pylori strain NCTC11637

63.964

95.965

0.614
  recA Streptococcus pyogenes NZ131

64.438

94.813

0.611
  recA Lactococcus lactis subsp. cremoris KW2

62.353

97.983

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

94.813

0.608
  recA Streptococcus mitis NCTC 12261

62.059

97.983

0.608
  recA Streptococcus mitis SK321

62.059

97.983

0.608
  recA Streptococcus pneumoniae D39

63.939

95.101

0.608
  recA Streptococcus pneumoniae Rx1

63.939

95.101

0.608
  recA Streptococcus pneumoniae R6

63.939

95.101

0.608
  recA Streptococcus pneumoniae TIGR4

63.939

95.101

0.608
  recA Streptococcus mutans UA159

63.253

95.677

0.605
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.19

93.948

0.594

Multiple sequence alignment