Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACKGJP_RS21790 Genome accession   NZ_CP176395
Coordinates   5187199..5188245 (-) Length   348 a.a.
NCBI ID   WP_409340904.1    Uniprot ID   -
Organism   Paenibacillus sp. MBLB4367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5182199..5193245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKGJP_RS21770 (ACKGJP_21770) spoVS 5183214..5183474 (-) 261 WP_027084382.1 stage V sporulation protein SpoVS -
  ACKGJP_RS21775 (ACKGJP_21775) - 5183636..5184427 (-) 792 WP_409347226.1 TIGR00282 family metallophosphoesterase -
  ACKGJP_RS21780 (ACKGJP_21780) rny 5184630..5186180 (-) 1551 WP_409340902.1 ribonuclease Y -
  ACKGJP_RS21785 (ACKGJP_21785) - 5186432..5187091 (-) 660 WP_409340903.1 RecX family transcriptional regulator -
  ACKGJP_RS21790 (ACKGJP_21790) recA 5187199..5188245 (-) 1047 WP_409340904.1 recombinase RecA Machinery gene
  ACKGJP_RS21795 (ACKGJP_21795) - 5188536..5189795 (-) 1260 WP_409340905.1 competence/damage-inducible protein A -
  ACKGJP_RS21800 (ACKGJP_21800) pgsA 5189994..5190575 (-) 582 WP_409340906.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKGJP_RS21805 (ACKGJP_21805) rimO 5190572..5191900 (-) 1329 WP_409340907.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACKGJP_RS21810 (ACKGJP_21810) - 5192031..5192528 (-) 498 WP_409347227.1 YajQ family cyclic di-GMP-binding protein -
  ACKGJP_RS21815 (ACKGJP_21815) - 5192719..5192883 (-) 165 WP_409340908.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37580.97 Da        Isoelectric Point: 5.0789

>NTDB_id=1079890 ACKGJP_RS21790 WP_409340904.1 5187199..5188245(-) (recA) [Paenibacillus sp. MBLB4367]
MADRRAALEAALRNIEKQFGKGSIMKLGESTHMQVETIPSGSLALDIALGVGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKAGGQAAFIDAEHALDPLYASKLGINIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKVIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIETIKQGNDMIGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGSIVDMGTELDIIDKSGAWYSFEGERLGQGRENAKQYLKDNKHIADIIEKK
IRDASVLVPTANMAVSQDDEEEEAALFE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1079890 ACKGJP_RS21790 WP_409340904.1 5187199..5188245(-) (recA) [Paenibacillus sp. MBLB4367]
TTGGCGGATCGTCGTGCGGCATTGGAAGCGGCATTGCGTAATATCGAGAAACAGTTCGGAAAAGGTTCGATCATGAAGCT
CGGGGAATCGACTCACATGCAGGTGGAGACGATCCCAAGCGGCTCGCTGGCGCTGGACATCGCGCTCGGCGTAGGCGGAT
TTCCCCGCGGCAGAATTATAGAAGTATACGGACCGGAATCATCCGGTAAAACAACCGTAGCCTTGCACGCGATTGCGGAA
GTGCAAAAAGCCGGCGGACAAGCCGCTTTCATCGATGCGGAGCATGCACTTGATCCTTTATATGCAAGCAAGCTGGGCAT
CAATATCGATGAGCTGCTGCTGTCTCAGCCGGATACCGGCGAGCAGGCGCTCGAAATCGCGGAAGCGCTCGTGCGCAGCG
GAGCGGTAGACATTATCGTCATCGACTCGGTTGCCGCGCTCGTACCGAAAGCGGAAATCGAAGGCGATATGGGCGACTCT
CATGTCGGCTTGCAGGCTCGTCTCATGTCGCAAGCGCTGCGGAAGCTGTCCGGCGCTATCAACAAATCGAAGGTTATCGC
GATTTTCATCAACCAGCTTCGCGAGAAGGTCGGCGTAATGTTCGGCAACCCGGAAACAACGCCAGGCGGACGCGCGCTCA
AGTTCTATTCCTCGGTCCGTTTGGATGTACGTCGTATCGAGACGATCAAGCAAGGCAACGATATGATCGGTAACCGCACG
CGCATTAAGGTTGTAAAGAACAAAGTGGCGCCTCCGTTCAAGCAGGCTGAGGTAGACATTATGTATGGTGAAGGCATTTC
TAAAGAAGGCAGCATCGTCGATATGGGCACGGAGCTCGACATTATCGACAAGAGCGGCGCTTGGTATTCGTTCGAAGGCG
AACGTCTCGGCCAAGGGCGCGAAAATGCGAAACAGTATTTGAAGGATAACAAACACATTGCCGACATTATCGAGAAGAAG
ATTCGCGATGCCAGCGTGTTGGTGCCGACTGCTAATATGGCGGTTTCCCAGGATGACGAAGAGGAAGAAGCGGCATTGTT
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.282

92.816

0.773
  recA Latilactobacillus sakei subsp. sakei 23K

72.647

97.701

0.71
  recA Streptococcus mitis NCTC 12261

67.93

98.563

0.67
  recA Streptococcus mutans UA159

66.957

99.138

0.664
  recA Streptococcus mitis SK321

67.347

98.563

0.664
  recA Streptococcus pyogenes NZ131

70.37

93.103

0.655
  recA Streptococcus pneumoniae Rx1

69.846

93.391

0.652
  recA Streptococcus pneumoniae D39

69.846

93.391

0.652
  recA Streptococcus pneumoniae R6

69.846

93.391

0.652
  recA Streptococcus pneumoniae TIGR4

69.846

93.391

0.652
  recA Lactococcus lactis subsp. cremoris KW2

66.172

96.839

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.573

98.276

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

93.966

0.612
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.241

0.609
  recA Acinetobacter baumannii D1279779

61.272

99.425

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.048

95.115

0.609
  recA Vibrio cholerae strain A1552

64.048

95.115

0.609
  recA Acinetobacter baylyi ADP1

60.116

99.425

0.598
  recA Ralstonia pseudosolanacearum GMI1000

63.11

94.253

0.595
  recA Glaesserella parasuis strain SC1401

60.411

97.989

0.592
  recA Pseudomonas stutzeri DSM 10701

61.515

94.828

0.583
  recA Helicobacter pylori 26695

62.229

92.816

0.578
  recA Helicobacter pylori strain NCTC11637

62.229

92.816

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.18

92.529

0.566

Multiple sequence alignment