Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFLKC_RS10795 Genome accession   NZ_CP175916
Coordinates   2396008..2397030 (-) Length   340 a.a.
NCBI ID   WP_242850981.1    Uniprot ID   -
Organism   Clostridium sp. FAM 27665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2391008..2402030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFLKC_RS10770 (ACFLKC_10770) - 2391167..2391523 (-) 357 WP_409068559.1 SMR family transporter -
  ACFLKC_RS10775 (ACFLKC_10775) - 2391520..2392806 (-) 1287 WP_409068560.1 hypothetical protein -
  ACFLKC_RS10780 (ACFLKC_10780) - 2392825..2393691 (-) 867 WP_163236527.1 decaprenyl-phosphate phosphoribosyltransferase -
  ACFLKC_RS10785 (ACFLKC_10785) - 2393834..2394094 (-) 261 WP_003362540.1 stage V sporulation protein S -
  ACFLKC_RS10790 (ACFLKC_10790) rny 2394233..2395774 (-) 1542 WP_053466879.1 ribonuclease Y -
  ACFLKC_RS10795 (ACFLKC_10795) recA 2396008..2397030 (-) 1023 WP_242850981.1 recombinase RecA Machinery gene
  ACFLKC_RS10800 (ACFLKC_10800) pgsA 2397228..2397812 (-) 585 WP_053466880.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFLKC_RS10805 (ACFLKC_10805) rimO 2397796..2399133 (-) 1338 WP_409068561.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACFLKC_RS10810 (ACFLKC_10810) - 2399228..2401504 (-) 2277 WP_163204032.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37106.49 Da        Isoelectric Point: 6.5200

>NTDB_id=1079128 ACFLKC_RS10795 WP_242850981.1 2396008..2397030(-) (recA) [Clostridium sp. FAM 27665]
MGQIEKQFGKGSIMKLGEDSILNVESISTGSLDLDIALGIGGVPRGRIIEIFGPESSGKTTVALHILAEAQRVGGAAAFI
DAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQ
ALRKLAGSINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRTRVKINKNKVAP
PFKMAEFDIMYNEGISKVGNILDVGVREELVEKSGSWFSYKDTRLGQGRENAKQFLKDNMNIALEIENTIRKKHDLPVVD
LKNLNIEKKTENKKEDNKEG

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=1079128 ACFLKC_RS10795 WP_242850981.1 2396008..2397030(-) (recA) [Clostridium sp. FAM 27665]
ATGGGACAAATAGAAAAGCAATTTGGAAAAGGTTCTATAATGAAGCTTGGTGAAGATAGTATATTAAATGTAGAATCTAT
ATCAACAGGAAGCTTAGATTTAGATATAGCATTAGGTATAGGTGGAGTTCCTAGAGGAAGAATAATAGAAATATTTGGAC
CAGAGTCCTCAGGTAAAACTACTGTAGCACTCCATATATTAGCAGAAGCACAAAGGGTAGGCGGAGCAGCAGCTTTTATA
GATGCAGAACATGCTTTGGATCCATCTTATGCTAGAAATCTAGGTGTTGATATAGACAACTTAATAGTTTCTCAACCAGA
TACAGGAGAACAGGCCTTAGAAATTACAGAAGCTTTAGTAAGATCCGGGGCAGTAGATGTTATAGTTGTGGACTCCGTAG
CAGCCTTAGTTCCTAGAGCGGAAATAGAAGGAGAAATGGGAGATACCCATGTAGGTCTTCAGGCAAGGCTTATGTCTCAA
GCTCTAAGAAAATTAGCAGGCTCTATAAATAAATCTAAATGTGTGGCTATATTCATAAACCAATTAAGAGAAAAAGTAGG
TATAATGTTTGGAAATCCAGAAACAACTCCTGGTGGAAGAGCATTAAAATTCTATTCTTCTGTTAGACTAGATGTAAGAA
GAATAGATTCTATAAAACAAGGCGATCAAATCTTGGGAAATAGAACAAGAGTAAAAATAAATAAAAATAAAGTAGCACCT
CCATTTAAAATGGCAGAATTTGATATCATGTATAATGAAGGAATATCAAAGGTAGGAAATATATTAGATGTAGGTGTTAG
AGAAGAGCTAGTTGAAAAAAGTGGTTCTTGGTTCTCTTATAAAGACACAAGATTAGGACAAGGAAGAGAAAATGCAAAAC
AATTTTTAAAAGATAACATGAATATAGCTTTAGAGATAGAAAATACTATAAGAAAAAAACATGATTTACCAGTTGTTGAT
TTAAAAAACTTAAATATAGAGAAGAAAACAGAGAATAAAAAAGAAGATAATAAGGAAGGATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

72.611

92.353

0.671
  recA Streptococcus pneumoniae TIGR4

63.717

99.706

0.635
  recA Streptococcus pneumoniae Rx1

63.717

99.706

0.635
  recA Streptococcus pneumoniae D39

63.717

99.706

0.635
  recA Streptococcus pneumoniae R6

63.717

99.706

0.635
  recA Streptococcus mitis NCTC 12261

63.018

99.412

0.626
  recA Latilactobacillus sakei subsp. sakei 23K

63.772

98.235

0.626
  recA Streptococcus mitis SK321

62.611

99.118

0.621
  recA Streptococcus mutans UA159

60.882

100

0.609
  recA Pseudomonas stutzeri DSM 10701

65.495

92.059

0.603
  recA Vibrio cholerae strain A1552

60.714

98.824

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.714

98.824

0.6
  recA Ralstonia pseudosolanacearum GMI1000

65.372

90.882

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.722

93.235

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.049

90.882

0.591
  recA Streptococcus pyogenes NZ131

64.013

92.353

0.591
  recA Glaesserella parasuis strain SC1401

64.63

91.471

0.591
  recA Helicobacter pylori 26695

64.309

91.471

0.588
  recA Neisseria gonorrhoeae MS11

64.516

91.176

0.588
  recA Neisseria gonorrhoeae MS11

64.516

91.176

0.588
  recA Neisseria gonorrhoeae strain FA1090

64.516

91.176

0.588
  recA Lactococcus lactis subsp. cremoris KW2

62.776

93.235

0.585
  recA Helicobacter pylori strain NCTC11637

63.666

91.471

0.582
  recA Acinetobacter baumannii D1279779

62.939

92.059

0.579
  recA Acinetobacter baylyi ADP1

62.3

92.059

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.129

91.471

0.55

Multiple sequence alignment