Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJU26_RS10385 Genome accession   NZ_CP175559
Coordinates   1988863..1989900 (-) Length   345 a.a.
NCBI ID   WP_414041967.1    Uniprot ID   -
Organism   Acidithiobacillus sp. M4-SHS-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1983863..1994900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJU26_RS10375 (ACJU26_10375) alaS 1985734..1988367 (-) 2634 WP_414041965.1 alanine--tRNA ligase -
  ACJU26_RS10380 (ACJU26_10380) - 1988392..1988835 (-) 444 WP_414041966.1 regulatory protein RecX -
  ACJU26_RS10385 (ACJU26_10385) recA 1988863..1989900 (-) 1038 WP_414041967.1 recombinase RecA Machinery gene
  ACJU26_RS10390 (ACJU26_10390) - 1990056..1990901 (-) 846 WP_414039580.1 CinA family protein -
  ACJU26_RS10395 (ACJU26_10395) - 1990898..1991386 (-) 489 WP_414039581.1 phosphatidylglycerophosphatase A -
  ACJU26_RS10400 (ACJU26_10400) thiL 1991376..1992398 (-) 1023 WP_414039582.1 thiamine-phosphate kinase -
  ACJU26_RS10405 (ACJU26_10405) gluQRS 1992540..1993463 (+) 924 WP_414039583.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  ACJU26_RS10410 (ACJU26_10410) sfsA 1993460..1994158 (+) 699 WP_414039584.1 DNA/RNA nuclease SfsA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36891.95 Da        Isoelectric Point: 5.4652

>NTDB_id=1078195 ACJU26_RS10385 WP_414041967.1 1988863..1989900(-) (recA) [Acidithiobacillus sp. M4-SHS-6]
MDDQRSKALSAALSQIDKQFGKGAVMRLGDHDAIKDIAVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHVI
ASCQQAGGTAAFIDAEHALDPGYAHKLGVDLENLLVSQPDTGEQALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGN
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFEIVDKSGAWYSYQGERIGQGKDNARQYLKEHPELAARIE
QQVRAAAAGNPLAFTDDVAEPAAAE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1078195 ACJU26_RS10385 WP_414041967.1 1988863..1989900(-) (recA) [Acidithiobacillus sp. M4-SHS-6]
ATGGATGATCAACGCAGCAAGGCTCTCTCGGCCGCTTTGTCCCAGATTGACAAGCAGTTTGGCAAGGGCGCGGTAATGCG
CCTCGGTGACCACGATGCCATCAAGGATATCGCCGTCTATTCCACCGGCTCCCTGGGCCTGGATCTGGCTCTGGGAGTAG
GGGGCTTGCCGCGAGGCCGGGTCGTCGAAATTTACGGGCCGGAATCCTCGGGCAAGACTACCCTGACCCTGCACGTCATT
GCCAGTTGTCAGCAGGCCGGTGGCACGGCGGCCTTTATCGATGCCGAACATGCTCTGGATCCCGGATATGCCCACAAGCT
GGGGGTGGATCTCGAAAATCTGCTGGTTTCCCAGCCGGATACGGGTGAGCAGGCCCTGGAAATCGCCGATATGCTGGTAC
GCTCCGGAGCGGTGGACCTGATCGTGGTGGACTCGGTAGCAGCCCTGACCCCCAAGGCCGAAATCGAAGGGGATATGGGT
GACTCCCATGTCGGCTTGCAGGCGCGCTTGATGAGTCAGGCCCTGCGCAAGCTCACCGCCAACATCTCCCGAACCAATAC
CCTGGTCATTTTCATTAACCAGATTCGCATGAAAATCGGCGTCATGTACGGGAGTCCGGAAACCACGACCGGAGGTAATG
CCCTCAAGTTCTATGCCTCGGTGCGCCTGGATATTCGCCGGATTGGCGCCATCAAGAAGGGTGACGAGGTCATAGGCAAT
GACACCCGGGTGAAAGTGGTCAAAAACAAGGTCGCCCCGCCATTCCGTGAAGCCGAATTTGCCATTTACTATGGTGAGGG
CATTTCCCGCCTATCCGAACTGGTGGATCTGGGCGTCAAGTTCGAGATTGTTGACAAAAGCGGGGCTTGGTATTCCTATC
AGGGCGAGCGGATTGGCCAGGGTAAGGATAATGCCCGGCAATATCTCAAGGAACACCCGGAGCTGGCCGCCCGGATCGAG
CAACAGGTGCGTGCGGCGGCTGCCGGGAATCCGCTGGCCTTCACCGATGATGTGGCGGAGCCTGCGGCAGCGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

75

93.913

0.704
  recA Pseudomonas stutzeri DSM 10701

74.769

94.203

0.704
  recA Neisseria gonorrhoeae MS11

72.923

94.203

0.687
  recA Neisseria gonorrhoeae MS11

72.923

94.203

0.687
  recA Neisseria gonorrhoeae strain FA1090

72.923

94.203

0.687
  recA Acinetobacter baumannii D1279779

73.148

93.913

0.687
  recA Ralstonia pseudosolanacearum GMI1000

74.763

91.884

0.687
  recA Glaesserella parasuis strain SC1401

71.429

95.362

0.681
  recA Vibrio cholerae strain A1552

70.988

93.913

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.988

93.913

0.667
  recA Helicobacter pylori strain NCTC11637

67.372

95.942

0.646
  recA Helicobacter pylori 26695

67.069

95.942

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.692

94.203

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

95.072

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

66.562

92.754

0.617
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.438

95.362

0.614
  recA Streptococcus pyogenes NZ131

63.19

94.493

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

93.913

0.594
  recA Streptococcus mutans UA159

62.883

94.493

0.594
  recA Streptococcus pneumoniae D39

62.577

94.493

0.591
  recA Streptococcus pneumoniae Rx1

62.577

94.493

0.591
  recA Streptococcus pneumoniae R6

62.577

94.493

0.591
  recA Streptococcus pneumoniae TIGR4

62.577

94.493

0.591
  recA Streptococcus mitis SK321

62.154

94.203

0.586
  recA Streptococcus mitis NCTC 12261

61.846

94.203

0.583
  recA Lactococcus lactis subsp. cremoris KW2

60.245

94.783

0.571

Multiple sequence alignment