Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJ2CR_RS20025 Genome accession   NZ_CP175551
Coordinates   5282889..5283977 (-) Length   362 a.a.
NCBI ID   WP_141325914.1    Uniprot ID   -
Organism   Myxococcus fulvus strain KYC1117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5277889..5288977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ2CR_RS20010 (ACJ2CR_20010) - 5279504..5280049 (-) 546 WP_408891675.1 GNAT family N-acetyltransferase -
  ACJ2CR_RS20015 (ACJ2CR_20015) - 5280099..5280278 (-) 180 WP_408891676.1 hypothetical protein -
  ACJ2CR_RS20020 (ACJ2CR_20020) - 5280497..5282659 (-) 2163 WP_267697724.1 alkaline phosphatase -
  ACJ2CR_RS20025 (ACJ2CR_20025) recA 5282889..5283977 (-) 1089 WP_141325914.1 recombinase RecA Machinery gene
  ACJ2CR_RS20030 (ACJ2CR_20030) - 5284090..5284917 (-) 828 WP_408891677.1 hypothetical protein -
  ACJ2CR_RS20035 (ACJ2CR_20035) glmS 5285090..5286925 (-) 1836 WP_223746407.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  ACJ2CR_RS20040 (ACJ2CR_20040) glmU 5287035..5288444 (-) 1410 WP_408891774.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39034.76 Da        Isoelectric Point: 6.8713

>NTDB_id=1078100 ACJ2CR_RS20025 WP_141325914.1 5282889..5283977(-) (recA) [Myxococcus fulvus strain KYC1117]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAISTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTIAKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNDNIVEKSGSWFSFNGERIGQGRENAKDYLREHPEVAR
DIETRVLEKYGIAKGAPLSAAPAEEAPAEGASEKRQRVKAVK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=1078100 ACJ2CR_RS20025 WP_141325914.1 5282889..5283977(-) (recA) [Myxococcus fulvus strain KYC1117]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGTAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCGCTGATGCGGGACGTGCAGGCCATTTCGACGGGCTCGATTTCGCTGGATATCGCCC
TGGGCGTGGGCGGCGTGCCCAAGGGCCGCATCATCGAGATCTTCGGACCGGAGTCCTCCGGCAAGACGACGCTGTGTCTG
CACATCGTCGCCGAGGCGCAGAAGCGCGGCGGCATCTGCGGCTACGTGGACGCCGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCGGAGA
TGCTGGTGCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTTCCCAAGGCGGAGCTCGAGGGC
GAGATGGGCGACGCACACATGGGTGTGCAGGCCCGTCTGATGAGCCAGGCTTTGCGCAAGCTCACGGGCACCATCGCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCCGAGACGACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAATGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTGGCGCCTCCGTTCAAGGAGGTCGAGTTCGACATCATGTA
CGGCACGGGCATCTCCCGTGAGGGCGACCTCATCGACCTGGCCTCCAACGACAACATCGTGGAGAAGAGCGGCAGCTGGT
TCTCGTTCAACGGCGAGCGCATCGGTCAGGGGCGGGAGAACGCGAAGGACTACCTGCGGGAGCACCCGGAGGTGGCGCGC
GACATCGAGACCCGCGTGCTGGAGAAGTACGGCATCGCGAAGGGCGCGCCCCTCTCCGCGGCCCCCGCGGAGGAGGCCCC
CGCCGAGGGTGCCAGCGAGAAGCGTCAGCGCGTGAAGGCCGTGAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.693

90.884

0.624
  recA Pseudomonas stutzeri DSM 10701

62.824

95.856

0.602
  recA Vibrio cholerae strain A1552

66.258

90.055

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.258

90.055

0.597
  recA Acinetobacter baylyi ADP1

62.248

95.856

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.281

94.475

0.588
  recA Helicobacter pylori strain NCTC11637

61.383

95.856

0.588
  recA Helicobacter pylori 26695

60.807

95.856

0.583
  recA Acinetobacter baumannii D1279779

64.526

90.331

0.583
  recA Glaesserella parasuis strain SC1401

64.907

88.95

0.577
  recA Neisseria gonorrhoeae strain FA1090

64.506

89.503

0.577
  recA Neisseria gonorrhoeae MS11

64.506

89.503

0.577
  recA Neisseria gonorrhoeae MS11

64.506

89.503

0.577
  recA Streptococcus pneumoniae TIGR4

58.924

97.514

0.575
  recA Streptococcus pneumoniae D39

58.924

97.514

0.575
  recA Streptococcus pneumoniae R6

58.924

97.514

0.575
  recA Streptococcus pneumoniae Rx1

58.924

97.514

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

91.436

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.272

89.503

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

62.08

90.331

0.561
  recA Streptococcus mitis NCTC 12261

58.551

95.304

0.558
  recA Streptococcus mitis SK321

58.721

95.028

0.558
  recA Streptococcus pyogenes NZ131

60.303

91.16

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

91.713

0.541
  recA Streptococcus mutans UA159

58.912

91.436

0.539
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.436

0.53

Multiple sequence alignment