Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJ2CR_RS19725 Genome accession   NZ_CP175551
Coordinates   5203934..5204962 (+) Length   342 a.a.
NCBI ID   WP_223746456.1    Uniprot ID   -
Organism   Myxococcus fulvus strain KYC1117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5198934..5209962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ2CR_RS19705 (ACJ2CR_19705) - 5199237..5199860 (+) 624 WP_074949874.1 DUF2378 family protein -
  ACJ2CR_RS19710 (ACJ2CR_19710) - 5199761..5200333 (-) 573 WP_223746459.1 hypothetical protein -
  ACJ2CR_RS19715 (ACJ2CR_19715) - 5200631..5202391 (+) 1761 WP_408891649.1 YifB family Mg chelatase-like AAA ATPase -
  ACJ2CR_RS19720 (ACJ2CR_19720) - 5202274..5203635 (-) 1362 WP_408891773.1 NAD(P)/FAD-dependent oxidoreductase -
  ACJ2CR_RS19725 (ACJ2CR_19725) recA 5203934..5204962 (+) 1029 WP_223746456.1 recombinase RecA Machinery gene
  ACJ2CR_RS19730 (ACJ2CR_19730) - 5204959..5205468 (-) 510 WP_223746455.1 DUF1285 domain-containing protein -
  ACJ2CR_RS19735 (ACJ2CR_19735) - 5205527..5206987 (-) 1461 WP_408891650.1 hypothetical protein -
  ACJ2CR_RS19740 (ACJ2CR_19740) - 5206984..5208246 (-) 1263 WP_267697695.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACJ2CR_RS19745 (ACJ2CR_19745) pssA 5208433..5209293 (-) 861 WP_141325224.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36135.39 Da        Isoelectric Point: 7.1100

>NTDB_id=1078099 ACJ2CR_RS19725 WP_223746456.1 5203934..5204962(+) (recA) [Myxococcus fulvus strain KYC1117]
MSKLTEKLKAVAAAVASIEKQFGRGSVMTLGGDTQEHKVAVIPSGSVGLDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDISYARKLGVRVEELLVSQPDTGEQALEITEQLVRSGAVDLIIVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGCCIVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMEIRRTGNLKEGDAVV
GSRARVKVVKNKLAPPFQEAEFDLLYGSGIHRAGEVLDLGVATGLIDKSGSHFSLRGERIGQGRERAAEWLREHSDTMEA
LARELAGTPPLPCPSPAVEAAA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=1078099 ACJ2CR_RS19725 WP_223746456.1 5203934..5204962(+) (recA) [Myxococcus fulvus strain KYC1117]
ATGAGCAAGCTGACGGAGAAGCTGAAGGCAGTGGCGGCGGCGGTGGCGTCCATCGAGAAGCAGTTCGGACGAGGCTCGGT
GATGACGTTGGGCGGGGACACGCAGGAGCACAAGGTCGCGGTGATTCCGTCCGGCTCGGTGGGGTTGGACCGGGCGCTCG
GCGTGGGAGGCTATCCGCGGGGCCGCGTGGTGGAGGTGTTCGGCAACGAGTCGTCTGGCAAGACGACGCTCACGTTGCAT
GCGATTGCGCAGGTCCAGGCCGCAGGCGGCGTGGCGGCGTTCATCGACGCGGAGCATGCGCTCGACATCTCCTACGCGCG
CAAGCTGGGGGTGCGGGTGGAGGAGCTGCTGGTGTCCCAGCCAGACACGGGTGAGCAGGCGCTGGAAATCACCGAGCAGC
TCGTGCGCTCGGGAGCGGTGGACCTCATCATCGTGGATTCGGTGGCGGCGCTGGTGCCTCGCGCGGAAATCGAGGGTGAG
ATGGGCGACGCACACATGGGTGTGCAGGCGCGGCTGATGAGCCAGGCCCTGCGCAAGCTCACGGGCGCGGTGAGCCGCTC
GGGGTGCTGCATCGTCTTCATCAACCAGATCCGGATGAAGATTGGCGTGATGTTCGGCAACCCCGAGACCACCACCGGAG
GGAACGCGCTGAAGTTCTACTCCTCGGTGCGCATGGAGATTCGGCGCACGGGCAACCTCAAGGAGGGAGACGCCGTGGTG
GGCTCGCGGGCCCGGGTGAAGGTGGTGAAGAACAAGCTGGCCCCGCCCTTCCAGGAGGCGGAGTTCGATTTGTTGTACGG
CAGCGGCATCCACCGTGCCGGGGAGGTGCTGGACCTGGGCGTGGCCACGGGACTCATCGACAAGTCCGGCAGCCACTTCA
GTCTCCGAGGCGAGCGCATCGGCCAGGGAAGGGAGCGCGCCGCGGAGTGGCTGCGTGAGCACTCCGACACGATGGAGGCG
CTGGCCCGGGAGCTCGCGGGGACACCGCCGCTCCCCTGCCCCTCGCCCGCCGTGGAAGCCGCCGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

64.308

95.029

0.611
  recA Neisseria gonorrhoeae MS11

64.308

95.029

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.308

95.029

0.611
  recA Ralstonia pseudosolanacearum GMI1000

65.615

92.69

0.608
  recA Pseudomonas stutzeri DSM 10701

64.688

93.567

0.605
  recA Acinetobacter baylyi ADP1

63.24

93.86

0.594
  recA Glaesserella parasuis strain SC1401

62.848

94.444

0.594
  recA Vibrio cholerae strain A1552

63.009

93.275

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.009

93.275

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

63.492

92.105

0.585
  recA Acinetobacter baumannii D1279779

62.069

93.275

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

61.981

91.52

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.125

93.86

0.564
  recA Helicobacter pylori 26695

55.882

99.415

0.556
  recA Helicobacter pylori strain NCTC11637

55.882

99.415

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.585

94.444

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.563

93.567

0.529
  recA Streptococcus pneumoniae TIGR4

54.908

95.322

0.523
  recA Streptococcus pneumoniae Rx1

54.908

95.322

0.523
  recA Streptococcus pneumoniae D39

54.908

95.322

0.523
  recA Streptococcus pneumoniae R6

54.908

95.322

0.523
  recA Lactococcus lactis subsp. cremoris KW2

55.625

93.567

0.52
  recA Streptococcus pyogenes NZ131

54.938

94.737

0.52
  recA Streptococcus mutans UA159

55.312

93.567

0.518
  recA Streptococcus mitis SK321

55.205

92.69

0.512
  recA Streptococcus mitis NCTC 12261

54.012

94.737

0.512

Multiple sequence alignment