Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJJWD_RS25335 Genome accession   NZ_CP174505
Coordinates   5560984..5562093 (-) Length   369 a.a.
NCBI ID   WP_407714679.1    Uniprot ID   -
Organism   Comamonas testosteroni strain VSPL.dLG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5555984..5567093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJWD_RS25315 (ACJJWD_25330) cycA 5557078..5558490 (+) 1413 WP_211458178.1 D-serine/D-alanine/glycine transporter -
  ACJJWD_RS25320 (ACJJWD_25335) yddG 5558628..5559548 (+) 921 WP_407714677.1 aromatic amino acid DMT transporter YddG -
  ACJJWD_RS25325 (ACJJWD_25340) - 5559574..5560308 (-) 735 WP_407714678.1 hypothetical protein -
  ACJJWD_RS25330 (ACJJWD_25345) recX 5560368..5560838 (-) 471 WP_043003304.1 recombination regulator RecX -
  ACJJWD_RS25335 (ACJJWD_25350) recA 5560984..5562093 (-) 1110 WP_407714679.1 recombinase RecA Machinery gene
  ACJJWD_RS25340 (ACJJWD_25355) - 5562232..5562723 (+) 492 WP_407714680.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACJJWD_RS25345 (ACJJWD_25360) - 5562833..5563510 (+) 678 WP_003064757.1 response regulator transcription factor -
  ACJJWD_RS25350 (ACJJWD_25365) - 5563622..5565064 (+) 1443 WP_043003300.1 sensor histidine kinase -
  ACJJWD_RS25355 (ACJJWD_25370) - 5565285..5566262 (+) 978 WP_003060043.1 tripartite tricarboxylate transporter substrate-binding protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39089.94 Da        Isoelectric Point: 5.3847

>NTDB_id=1077461 ACJJWD_RS25335 WP_407714679.1 5560984..5562093(-) (recA) [Comamonas testosteroni strain VSPL.dLG]
MNAIAKTNDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRE
NPALAIEIENKVRDSLGIKLLPVDGAAAAEAKPAKGGKGKVDKDGVIEA

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1077461 ACJJWD_RS25335 WP_407714679.1 5560984..5562093(-) (recA) [Comamonas testosteroni strain VSPL.dLG]
ATGAACGCCATCGCCAAGACCAACGACGCCAACAGCGAAAAAGCCAAAGCCCTGGCAGCCGCCCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGAAGCTCGGCGAAGGTGAAGCCATTGAAGACATCCAGGTCGTCTCCACCGGCTCCC
TGGGCCTGGATATCGCACTGGGCGTGGGCGGTCTGCCGCGTGGCCGCGTGATTGAAATCTACGGTCCAGAATCCTCGGGC
AAGACCACGCTGACGCTGCAGGTCATTGCCGAGATGCAAAAGCAGGGCGGCACCTGCGCCTTCATCGACGCCGAACATGC
GCTGGACACCAGCTATGCCCAGAAGCTGGGTGTGAACCTCAGCGACGTGCTGATCAGCCAGCCCGACACCGGCGAACAGG
CCCTGGAGATCTGCGACAGCCTGGTGCGCTCGGGTGCCGTGGACCTGATCGTCATCGACTCGGTGGCCGCACTGACGCCC
AAGGCCGAAATCGAAGGCGAGATGGGCGATGCCCTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCGCAAGCT
GACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTT
CGCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTATGCCTCCGTGCGTCTGGATATCCGCCGCACCGGCACCATC
AAGAAGGGCGATGAGGCCATCGGCAACGAAACCAAGGTCAAGGTCGTGAAGAACAAGGTCTCGCCTCCCTTCAAGACGGC
CGAGTTCGACATTCTGTTTGGCGAAGGCATCAGCCGCGAAGGCGAGATTCTGGACATGGGCGTGAACGCCAAGATCCTGG
AAAAAAGCGGTGCCTGGTATGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGTGAGTTCCTGCGCGAG
AACCCCGCGCTGGCCATCGAGATCGAAAACAAGGTGCGCGATAGCCTGGGCATCAAGCTGCTGCCTGTGGACGGGGCTGC
CGCCGCCGAAGCCAAGCCTGCCAAGGGCGGCAAAGGCAAGGTCGACAAGGACGGGGTGATCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.758

85.095

0.713
  recA Neisseria gonorrhoeae strain FA1090

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Pseudomonas stutzeri DSM 10701

71.472

88.347

0.631
  recA Glaesserella parasuis strain SC1401

71.296

87.805

0.626
  recA Acinetobacter baylyi ADP1

69.632

88.347

0.615
  recA Acinetobacter baumannii D1279779

69.632

88.347

0.615
  recA Vibrio cholerae strain A1552

69.632

88.347

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.632

88.347

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.082

92.683

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

89.431

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

88.618

0.569
  recA Helicobacter pylori strain NCTC11637

64.024

88.889

0.569
  recA Helicobacter pylori 26695

64.024

88.889

0.569
  recA Streptococcus mutans UA159

57.5

97.561

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.162

90.244

0.561
  recA Streptococcus mitis SK321

59.42

93.496

0.556
  recA Lactococcus lactis subsp. cremoris KW2

60.714

91.057

0.553
  recA Streptococcus mitis NCTC 12261

59.13

93.496

0.553
  recA Streptococcus pneumoniae Rx1

59.184

92.954

0.55
  recA Streptococcus pneumoniae D39

59.184

92.954

0.55
  recA Streptococcus pneumoniae R6

59.184

92.954

0.55
  recA Streptococcus pneumoniae TIGR4

59.184

92.954

0.55
  recA Streptococcus pyogenes NZ131

60.597

90.786

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

89.431

0.537

Multiple sequence alignment