Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJJVG_RS17310 Genome accession   NZ_CP174503
Coordinates   3713087..3714151 (-) Length   354 a.a.
NCBI ID   WP_108476419.1    Uniprot ID   -
Organism   Pseudocitrobacter faecalis strain AHC.AZy     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3708087..3719151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVG_RS17295 (ACJJVG_17295) csrA 3709275..3709460 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  ACJJVG_RS17300 (ACJJVG_17300) alaS 3709759..3712386 (-) 2628 WP_407731485.1 alanine--tRNA ligase -
  ACJJVG_RS17305 (ACJJVG_17305) recX 3712516..3713016 (-) 501 WP_108476420.1 recombination regulator RecX -
  ACJJVG_RS17310 (ACJJVG_17310) recA 3713087..3714151 (-) 1065 WP_108476419.1 recombinase RecA Machinery gene
  ACJJVG_RS17315 (ACJJVG_17315) pncC 3714232..3714729 (-) 498 WP_108476418.1 nicotinamide-nucleotide amidase -
  ACJJVG_RS17320 (ACJJVG_17320) - 3714928..3715167 (+) 240 WP_407731486.1 hypothetical protein -
  ACJJVG_RS17325 (ACJJVG_17325) - 3715195..3716073 (-) 879 WP_189623974.1 metal ABC transporter substrate-binding protein -
  ACJJVG_RS17330 (ACJJVG_17330) - 3716083..3716946 (-) 864 WP_108476415.1 metal ABC transporter permease -
  ACJJVG_RS17335 (ACJJVG_17335) - 3716943..3717629 (-) 687 WP_407732819.1 metal ABC transporter ATP-binding protein -
  ACJJVG_RS17340 (ACJJVG_17340) mltB 3717827..3718906 (-) 1080 WP_108476413.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38130.59 Da        Isoelectric Point: 4.8838

>NTDB_id=1077430 ACJJVG_RS17310 WP_108476419.1 3713087..3714151(-) (recA) [Pseudocitrobacter faecalis strain AHC.AZy]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVIG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSTPDFVVDENDTHAKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1077430 ACJJVG_RS17310 WP_108476419.1 3713087..3714151(-) (recA) [Pseudocitrobacter faecalis strain AHC.AZy]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAAATTGAGAAACAATTTGGCAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCACTGGATATCGCACTGGGTG
CAGGCGGTCTGCCGATGGGGCGTATCGTCGAAATCTACGGGCCTGAATCGTCCGGTAAAACAACGCTGACCCTGCAGGTT
ATTGCTGCGGCACAGCGTGAAGGCAAAACCTGCGCCTTTATCGATGCAGAGCACGCGCTGGATCCCATCTATGCGCGTAA
GCTGGGGGTTGATATCGACAACCTGCTGTGTTCTCAGCCAGATACTGGTGAACAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCTGGCGCGGTTGACGTGCTGGTTGTCGACTCCGTTGCGGCACTGACACCAAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAACAGTCCAA
CACGCTGCTTATCTTCATCAACCAGATCCGTATGAAAATTGGCGTCATGTTCGGTAACCCGGAAACCACCACTGGCGGTA
ACGCGCTGAAATTCTATGCGTCCGTTCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGCGATAACGTCATCGGT
AGTGAAACCCGCGTGAAAGTGGTGAAAAACAAAATCGCCGCACCGTTCAAACAGGCCGAATTCCAGATCCTCTACGGTGA
AGGTATTAACTTCCTGGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ACAACGGCGACAAAATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAAATC
GAGAAAAAAGTGCGCGAGTTACTGCTCAGCAATCAGGATTCTACGCCGGATTTCGTGGTCGATGAAAACGACACGCACGC
GAAAGAAACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.686

93.503

0.782
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.686

93.503

0.782
  recA Acinetobacter baylyi ADP1

72.754

97.458

0.709
  recA Pseudomonas stutzeri DSM 10701

73.591

95.198

0.701
  recA Acinetobacter baumannii D1279779

74.695

92.655

0.692
  recA Glaesserella parasuis strain SC1401

71.818

93.22

0.669
  recA Ralstonia pseudosolanacearum GMI1000

67.56

94.915

0.641
  recA Neisseria gonorrhoeae MS11

69.018

92.09

0.636
  recA Neisseria gonorrhoeae MS11

69.018

92.09

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.09

0.636
  recA Streptococcus mutans UA159

59.207

99.718

0.59
  recA Helicobacter pylori strain NCTC11637

62.018

95.198

0.59
  recA Helicobacter pylori 26695

61.721

95.198

0.588
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.229

91.243

0.568
  recA Streptococcus pneumoniae D39

62.229

91.243

0.568
  recA Streptococcus pneumoniae R6

62.229

91.243

0.568
  recA Streptococcus mitis SK321

62.229

91.243

0.568
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus pneumoniae Rx1

62.229

91.243

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.678

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.808

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551

Multiple sequence alignment