Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJA3J_RS10540 Genome accession   NZ_CP174345
Coordinates   2063221..2064264 (+) Length   347 a.a.
NCBI ID   WP_089652347.1    Uniprot ID   A0A3D8VUE7
Organism   Halobacillus sp. SY10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058221..2069264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA3J_RS10515 (ACJA3J_10515) - 2058943..2059203 (+) 261 WP_115893179.1 DUF3243 domain-containing protein -
  ACJA3J_RS10520 (ACJA3J_10520) - 2059398..2060189 (+) 792 WP_089652351.1 DUF3388 domain-containing protein -
  ACJA3J_RS10525 (ACJA3J_10525) - 2060208..2061125 (+) 918 WP_089652350.1 helix-turn-helix domain-containing protein -
  ACJA3J_RS10530 (ACJA3J_10530) pgsA 2061243..2061821 (+) 579 WP_089652349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACJA3J_RS10535 (ACJA3J_10535) - 2061818..2063056 (+) 1239 WP_089652348.1 competence/damage-inducible protein A -
  ACJA3J_RS10540 (ACJA3J_10540) recA 2063221..2064264 (+) 1044 WP_089652347.1 recombinase RecA Machinery gene
  ACJA3J_RS10545 (ACJA3J_10545) rny 2064609..2066171 (+) 1563 WP_089652346.1 ribonuclease Y -
  ACJA3J_RS10550 (ACJA3J_10550) - 2066259..2067056 (+) 798 WP_089652345.1 TIGR00282 family metallophosphoesterase -
  ACJA3J_RS10555 (ACJA3J_10555) - 2067165..2067425 (+) 261 WP_008640081.1 stage V sporulation protein S -
  ACJA3J_RS10560 (ACJA3J_10560) tdh 2067932..2068972 (+) 1041 WP_406946210.1 L-threonine 3-dehydrogenase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37816.94 Da        Isoelectric Point: 5.0133

>NTDB_id=1076774 ACJA3J_RS10540 WP_089652347.1 2063221..2064264(+) (recA) [Halobacillus sp. SY10]
MSDRKQALDMALRQIEKQFGKGSIMKLGESAEQKVNTVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
AQRKGGQAAFIDAEHALDPVYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAVDMVVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
RLKVVKNKVAPPFRQAEVDIMYGEGISREGELLDIGTDLDLIQKSGSWYSYKDDRLGQGRENAKQFLKENVEVYEEVKKL
IRDHYGMEADPETADADNKESQETLDV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1076774 ACJA3J_RS10540 WP_089652347.1 2063221..2064264(+) (recA) [Halobacillus sp. SY10]
ATGAGCGATCGTAAACAAGCATTAGATATGGCATTACGTCAAATAGAAAAGCAATTCGGAAAAGGCTCTATTATGAAGCT
GGGGGAAAGCGCTGAGCAGAAAGTGAACACGGTTCCGAGTGGATCACTCGCTCTTGACGTGGCCCTTGGAGTCGGCGGCT
ACCCGCGTGGAAGAATTGTAGAAATTTATGGACCAGAATCTTCAGGTAAAACGACTGTTGCGCTTCACGCTATTGCAGAA
GCTCAAAGAAAAGGCGGTCAGGCAGCTTTCATCGATGCAGAGCATGCCCTTGATCCTGTCTATGCAAGAGCATTGGGTGT
AGACATTGAAGAACTTCTACTATCTCAACCGGATACAGGAGAGCAGGCTTTAGAAATCGCGGAGGCTCTTGTCCGTAGTG
GGGCCGTTGATATGGTTGTCATCGACTCTGTAGCAGCACTTGTACCGAAAGCTGAGATTGAAGGGGAAATGGGTGATGCA
CACGTTGGTTTGCAAGCCCGTTTAATGTCCCAGGCGCTTCGTAAGCTTTCTGGAGCCATAAATAAATCGAAAACGACGGC
CATCTTCATTAACCAGATTCGTGAAAAAGTAGGAGTTATGTTCGGTAACCCTGAAACAACCCCTGGTGGCCGTGCGCTGA
AATTCTATTCTTCTGTTCGTTTGGAAGTACGTCGTGCGGAGACTTTGAAACAAGGAAACGAAATGGTCGGAAATAAAACC
CGCTTGAAAGTAGTCAAAAACAAAGTGGCCCCTCCTTTCAGACAGGCGGAAGTAGATATTATGTACGGAGAAGGAATTTC
TCGAGAAGGGGAACTGCTTGATATCGGAACAGACCTCGATCTCATCCAGAAGAGTGGTTCCTGGTATTCATATAAGGATG
ATAGACTTGGCCAGGGCCGTGAGAATGCGAAACAATTCCTGAAAGAAAATGTAGAGGTCTACGAAGAAGTGAAAAAATTG
ATTCGAGACCATTATGGCATGGAAGCTGATCCAGAAACTGCAGATGCCGATAATAAAGAAAGTCAGGAAACGTTGGACGT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D8VUE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.727

95.101

0.787
  recA Latilactobacillus sakei subsp. sakei 23K

73.939

95.101

0.703
  recA Streptococcus mitis SK321

67.638

98.847

0.669
  recA Streptococcus mitis NCTC 12261

66.571

100

0.666
  recA Streptococcus pneumoniae TIGR4

66.763

99.712

0.666
  recA Streptococcus pneumoniae Rx1

66.763

99.712

0.666
  recA Streptococcus pneumoniae D39

66.763

99.712

0.666
  recA Streptococcus pneumoniae R6

66.763

99.712

0.666
  recA Streptococcus mutans UA159

66.474

99.712

0.663
  recA Streptococcus pyogenes NZ131

65.616

100

0.66
  recA Lactococcus lactis subsp. cremoris KW2

66.766

97.118

0.648
  recA Neisseria gonorrhoeae strain FA1090

66.972

94.236

0.631
  recA Neisseria gonorrhoeae MS11

66.972

94.236

0.631
  recA Neisseria gonorrhoeae MS11

66.972

94.236

0.631
  recA Glaesserella parasuis strain SC1401

61.808

98.847

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.444

95.389

0.605
  recA Vibrio cholerae strain A1552

63.444

95.389

0.605
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.202

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.236

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

94.524

0.599
  recA Acinetobacter baylyi ADP1

59.827

99.712

0.597
  recA Pseudomonas stutzeri DSM 10701

64.062

92.219

0.591
  recA Helicobacter pylori strain NCTC11637

61.846

93.66

0.579
  recA Helicobacter pylori 26695

61.846

93.66

0.579
  recA Acinetobacter baumannii D1279779

61.491

92.795

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.83

91.354

0.565

Multiple sequence alignment