Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACJEHT_RS00675 Genome accession   NZ_CP174243
Coordinates   151371..152417 (+) Length   348 a.a.
NCBI ID   WP_011215774.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF582     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 146371..157417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHT_RS00660 (ACJEHT_00660) - 149099..149293 (+) 195 WP_011946739.1 hypothetical protein -
  ACJEHT_RS00665 (ACJEHT_00665) - 149373..149867 (+) 495 WP_011215776.1 CinA family protein -
  ACJEHT_RS00670 (ACJEHT_00670) - 150132..151067 (+) 936 WP_011215775.1 hypothetical protein -
  ACJEHT_RS00675 (ACJEHT_00675) recA 151371..152417 (+) 1047 WP_011215774.1 recombinase RecA Machinery gene
  ACJEHT_RS00680 (ACJEHT_00680) recX 152410..152862 (+) 453 WP_011215773.1 recombination regulator RecX -
  ACJEHT_RS00685 (ACJEHT_00685) alaS 152880..155462 (+) 2583 WP_027226500.1 alanine--tRNA ligase -
  ACJEHT_RS00690 (ACJEHT_00690) - 155553..155750 (+) 198 WP_011946738.1 Thivi_2564 family membrane protein -
  ACJEHT_RS00695 (ACJEHT_00695) mavB 155987..157183 (+) 1197 WP_011215770.1 Dot/Icm T4SS effector MavB -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37932.58 Da        Isoelectric Point: 5.0776

>NTDB_id=1076416 ACJEHT_RS00675 WP_011215774.1 151371..152417(+) (recA) [Legionella pneumophila strain SPF582]
MEENKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVI
AECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGS
ETRVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGKENVRLYLKENPQVAAELE
QQIRTELLEKKLSVLASASEDLFETIDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1076416 ACJEHT_RS00675 WP_011215774.1 151371..152417(+) (recA) [Legionella pneumophila strain SPF582]
ATGGAAGAGAATAAACAAAAAGCACTATCAGCAGCGCTTTCGCAAATTGAACGCCAATTTGGCAAAGGGTCTGTAATGCG
CATGGGAGATAGCACGGTATCTCGGGATATCGAAGCAATCTCTACTGGCTCATTAGGTCTTGATATTGCCTTAGGGATAG
GCGGTTTGCCAAAAGGCCGTATTGTTGAAATTTATGGCCCTGAGTCTTCAGGTAAAACCACACTCACTCTTCAAGTGATC
GCTGAATGTCAAAAAATGGGCGGTACAGCAGCATTTATCGATGCTGAACACGCTCTGGATCCCAGCTATGCTCAGAAACT
CGGTGTGAAGGTGGACGAGCTTCTGGTTTCTCAGCCAGATACAGGCGAGCAAGCTCTGGAAATTACTGATATGCTGGTGC
GTTCAGCAGCAGTTGATGTAGTAATCATTGACTCGGTTGCTGCCTTGACTCCCAAAGCAGAAATTGAGGGAGAAATGGGC
GATTCCCATGTTGGTTTACAAGCAAGGCTGATGTCGCAAGCTCTGCGTAAATTGACCGCTAATATTAAACGTTCAAATAC
ACTGGTTATTTTTATTAACCAAATACGCATGAAAATTGGCGTGATGTTTGGTAGCCCTGAAACTACTACAGGGGGTAATG
CTTTGAAGTTTTATGCTTCGGTTCGTTTGGATATTCGTCGTATTGGTTCAATTAAAAAGGGTGAAGAAATATTAGGTAGT
GAAACCCGGGTTAAAGTAGTTAAAAATAAGGTAGCTCCACCGTTTAAAATGACAGAGTTTGATATTTTATATAACGAAGG
TATATCTCGTGAGAGTGAAATTATTAATCTGGGTGTTCAATTGAATTTAATTGAGAAATCAGGCGCCTGGTACAGCTACA
AACAGGAAAAAATCGGGCAGGGTAAAGAAAATGTCAGATTATATTTGAAAGAAAATCCCCAAGTCGCTGCAGAGCTTGAA
CAACAAATCCGTACCGAACTGTTGGAAAAAAAATTATCTGTGTTGGCTAGTGCATCAGAAGATCTTTTTGAGACTATAGA
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.093

98.563

0.75

  recA Acinetobacter baylyi ADP1

72

100

0.724

  recA Acinetobacter baumannii D1279779

74.695

94.253

0.704

  recA Glaesserella parasuis strain SC1401

71.681

97.414

0.698

  recA Vibrio cholerae strain A1552

69.364

99.425

0.69

  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.364

99.425

0.69

  recA Neisseria gonorrhoeae MS11

73.148

93.103

0.681

  recA Neisseria gonorrhoeae MS11

73.148

93.103

0.681

  recA Neisseria gonorrhoeae strain FA1090

73.148

93.103

0.681

  recA Ralstonia pseudosolanacearum GMI1000

74.679

89.655

0.67

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.45

98.276

0.624

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

95.69

0.621

  recA Helicobacter pylori 26695

65.231

93.391

0.609

  recA Helicobacter pylori strain NCTC11637

65.231

93.391

0.609

  recA Bacillus subtilis subsp. subtilis str. 168

65.421

92.241

0.603

  recA Streptococcus mitis SK321

60.856

93.966

0.572

  recA Streptococcus pneumoniae Rx1

60.55

93.966

0.569

  recA Streptococcus pneumoniae D39

60.55

93.966

0.569

  recA Streptococcus pneumoniae R6

60.55

93.966

0.569

  recA Streptococcus pneumoniae TIGR4

60.55

93.966

0.569

  recA Streptococcus mitis NCTC 12261

60.245

93.966

0.566

  recA Latilactobacillus sakei subsp. sakei 23K

60.991

92.816

0.566

  recA Streptococcus pyogenes NZ131

59.271

94.54

0.56

  recA Lactococcus lactis subsp. cremoris KW2

60

93.391

0.56

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

93.966

0.56

  recA Streptococcus mutans UA159

59.451

94.253

0.56


Multiple sequence alignment