Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RGQ30_RS03890 Genome accession   NZ_AP028947
Coordinates   856363..857442 (+) Length   359 a.a.
NCBI ID   WP_130558234.1    Uniprot ID   -
Organism   Limnobacter thiooxidans strain CS-K2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 851363..862442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGQ30_RS03860 (RGQ30_07650) ribBA 852076..853200 (+) 1125 WP_130558239.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  RGQ30_RS03865 (RGQ30_07660) ribH 853197..853703 (+) 507 WP_130558238.1 6,7-dimethyl-8-ribityllumazine synthase -
  RGQ30_RS03870 (RGQ30_07670) nusB 853696..854184 (+) 489 WP_130558722.1 transcription antitermination factor NusB -
  RGQ30_RS03875 (RGQ30_07680) thiL 854204..855283 (+) 1080 WP_338284756.1 thiamine-phosphate kinase -
  RGQ30_RS03880 (RGQ30_07690) - 855319..855786 (+) 468 WP_130558236.1 phosphatidylglycerophosphatase A -
  RGQ30_RS03885 (RGQ30_07700) - 855804..856301 (+) 498 WP_130558235.1 CinA family protein -
  RGQ30_RS03890 (RGQ30_07710) recA 856363..857442 (+) 1080 WP_130558234.1 recombinase RecA Machinery gene
  RGQ30_RS03895 (RGQ30_07720) - 857420..857980 (+) 561 WP_338284759.1 regulatory protein RecX -
  RGQ30_RS03900 (RGQ30_07730) sucC 858249..859415 (+) 1167 WP_130558232.1 ADP-forming succinate--CoA ligase subunit beta -
  RGQ30_RS03905 (RGQ30_07740) sucD 859504..860391 (+) 888 WP_130558231.1 succinate--CoA ligase subunit alpha -
  RGQ30_RS03910 (RGQ30_07750) - 860565..861098 (+) 534 WP_338284760.1 pilin -
  RGQ30_RS03915 (RGQ30_07760) moaC 861099..861572 (-) 474 WP_130558229.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38548.14 Da        Isoelectric Point: 5.5995

>NTDB_id=107480 RGQ30_RS03890 WP_130558234.1 856363..857442(+) (recA) [Limnobacter thiooxidans strain CS-K2]
MEDLRTKNQSSEKVKALAAALSQIEKQFGKGSIMRFGENEVIDDIQSVSTGSLGLDVALGIGGLPRGRVVEIYGPESSGK
TTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLPDLLISQPDTGEQALEIVDALVRSGSVDLVVIDSVAALTPK
AEIEGDMGDSLPGLQARLMSQALRKLTANIKRTNCLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSIK
KGDEVIGSETRVKVVKNKVSPPFKQAEFDILYGQGTSREGEVVDLGVLHGFVDKAGAWYSYNGEKIGQGKDNARDFLKAN
PAMSAEIENKIREKLGVRLLDAAAQAPVAKKKNEVEDSE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=107480 RGQ30_RS03890 WP_130558234.1 856363..857442(+) (recA) [Limnobacter thiooxidans strain CS-K2]
ATGGAAGATCTCAGAACCAAGAACCAGTCCTCGGAAAAAGTGAAGGCATTGGCCGCCGCGCTTAGCCAGATTGAAAAGCA
GTTTGGCAAAGGCAGCATCATGCGGTTCGGCGAAAACGAGGTTATCGATGACATTCAGTCTGTTTCAACTGGTTCCTTGG
GGCTTGATGTAGCGCTTGGTATCGGCGGTTTACCCCGCGGCCGGGTTGTTGAGATTTATGGTCCTGAATCATCAGGCAAA
ACTACCCTCACTTTGCAGGTCATTGCGGAAATGCAGAAGCTGGGCGGTACCTGTGCCTTCATCGATGCCGAACATGCGCT
TGACGTGCAATACGCTGCCAAGTTGGGCGTCAATCTGCCTGACCTGCTGATTTCCCAGCCCGATACGGGAGAGCAAGCAC
TAGAAATCGTGGACGCGCTGGTGCGTTCTGGATCTGTTGATCTGGTTGTCATCGACTCTGTTGCCGCATTGACACCCAAA
GCGGAAATTGAAGGCGATATGGGCGATTCCTTGCCCGGTTTGCAGGCCCGCCTGATGAGCCAGGCACTGCGCAAATTGAC
GGCCAACATCAAGCGTACCAATTGCCTTGTGGTCTTTATTAACCAGATCCGCATGAAAATTGGCGTCATGTTTGGTAGTC
CTGAAACCACCACAGGTGGTAACGCCCTGAAGTTTTACGCCTCAGTTCGTCTGGATATTCGACGGGTTGGTTCCATCAAA
AAAGGGGACGAAGTCATTGGCAGTGAAACGCGGGTGAAGGTGGTCAAGAACAAGGTCAGTCCGCCATTCAAACAGGCCGA
ATTCGATATTCTGTATGGTCAGGGCACTTCCCGCGAGGGTGAGGTGGTGGATCTGGGTGTATTGCACGGTTTTGTCGACA
AGGCGGGTGCCTGGTATTCCTACAACGGCGAGAAAATCGGGCAGGGTAAAGACAATGCTCGCGACTTCCTGAAGGCGAAT
CCGGCTATGTCTGCTGAAATCGAGAACAAGATTCGTGAAAAGCTTGGTGTTCGTCTCCTCGATGCAGCAGCTCAAGCGCC
GGTGGCAAAAAAGAAGAATGAAGTCGAAGACAGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.539

96.657

0.769
  recA Pseudomonas stutzeri DSM 10701

72.189

94.15

0.68
  recA Acinetobacter baylyi ADP1

72.289

92.479

0.669
  recA Glaesserella parasuis strain SC1401

73.089

91.086

0.666
  recA Neisseria gonorrhoeae MS11

72.121

91.922

0.663
  recA Neisseria gonorrhoeae MS11

72.121

91.922

0.663
  recA Neisseria gonorrhoeae strain FA1090

72.121

91.922

0.663
  recA Acinetobacter baumannii D1279779

72.755

89.972

0.655
  recA Vibrio cholerae strain A1552

71.517

89.972

0.643
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

89.972

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.529

94.708

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

90.808

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

91.086

0.579
  recA Helicobacter pylori 26695

63.804

90.808

0.579
  recA Streptococcus mutans UA159

57.542

99.721

0.574
  recA Helicobacter pylori strain NCTC11637

63.19

90.808

0.574
  recA Streptococcus mitis SK321

57.627

98.607

0.568
  recA Streptococcus pneumoniae TIGR4

56.425

99.721

0.563
  recA Streptococcus pneumoniae Rx1

56.425

99.721

0.563
  recA Streptococcus pneumoniae D39

56.425

99.721

0.563
  recA Streptococcus pneumoniae R6

56.425

99.721

0.563
  recA Streptococcus pyogenes NZ131

60

93.315

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

90.808

0.56
  recA Lactococcus lactis subsp. cremoris KW2

58.235

94.708

0.552
  recA Streptococcus mitis NCTC 12261

58.631

93.593

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.61

92.201

0.54

Multiple sequence alignment