Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACIPCF_RS06750 Genome accession   NZ_CP174138
Coordinates   1398494..1399573 (+) Length   359 a.a.
NCBI ID   WP_045999067.1    Uniprot ID   A0A0D6TGJ6
Organism   Paracoccus marcusii strain LL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393494..1404573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIPCF_RS06735 (ACIPCF_06735) - 1394330..1395478 (+) 1149 WP_408593940.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACIPCF_RS06740 (ACIPCF_06740) - 1395542..1397656 (+) 2115 WP_408593942.1 ATP-binding protein -
  ACIPCF_RS06745 (ACIPCF_06745) - 1397665..1398252 (-) 588 WP_408593944.1 hypothetical protein -
  ACIPCF_RS06750 (ACIPCF_06750) recA 1398494..1399573 (+) 1080 WP_045999067.1 recombinase RecA Machinery gene
  ACIPCF_RS06755 (ACIPCF_06755) alaS 1399714..1402365 (+) 2652 WP_408593946.1 alanine--tRNA ligase -
  ACIPCF_RS06760 (ACIPCF_06760) - 1402362..1402661 (+) 300 WP_045981229.1 DUF1330 domain-containing protein -
  ACIPCF_RS06765 (ACIPCF_06765) - 1402721..1403515 (+) 795 WP_045999070.1 class II glutamine amidotransferase -
  ACIPCF_RS06770 (ACIPCF_06770) - 1403519..1403836 (-) 318 WP_408593949.1 DUF4177 domain-containing protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38472.84 Da        Isoelectric Point: 4.9774

>NTDB_id=1074532 ACIPCF_RS06750 WP_045999067.1 1398494..1399573(+) (recA) [Paracoccus marcusii strain LL1]
MAQASIFDMTDKRAADKQKALDSALAQIERQFGKGSIMKLGKDSPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GAVKDRDEVVGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGRENAKQF
LRDRPEVAFAIEDKIRASHGLEFGVGEGSDSGDDDSLTE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1074532 ACIPCF_RS06750 WP_045999067.1 1398494..1399573(+) (recA) [Paracoccus marcusii strain LL1]
ATGGCACAGGCGAGCATCTTCGACATGACGGACAAACGCGCGGCGGACAAGCAGAAGGCGCTGGACAGCGCCCTGGCCCA
GATCGAACGGCAGTTCGGCAAGGGCTCGATCATGAAGCTGGGCAAGGACAGTCCGGTGGCCGAGATCGAGGCGACCTCGA
CGGGGTCGCTGGGTCTGGACATCGCGCTGGGCATCGGCGGCCTGCCCAAGGGCCGGATCATCGAGATCTTCGGGCCGGAA
AGTTCGGGCAAGACGACGCTGACACTGCATGTCGTGGCCGAGGAGCAGAAGAAGGGCGGCGTCTGCGCCTTCGTCGACGC
GGAGCACGCGCTGGACCCGCAATACGCCAAGAAGCTGGGCGTGAATCTGGACGAGCTGCTGATCAGTCAGCCCGACACGG
GCGAGCAGGCGCTTGAGATCGTGGACACGCTGGTGCGGTCGGGCGCGGTCAGCCTGGTCGTGGTCGACTCGGTCGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGACTGATGAGCCAGGCCAT
GCGCAAGTTGACCGCCAGCATCGGGCGTTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCA
TGTTCGGCAACCCCGAGACCACAACCGGCGGCAACGCGCTAAAGTTCTATGCCTCGGTTCGTCTGGACATCCGCCGCACC
GGCGCGGTCAAGGACCGCGACGAGGTTGTGGGCAACGCCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCCCCCTT
CCGGCAGGTCGAGTTCGACATCATGTACGGAGAGGGCATCAGCAAGGTCGGCGAACTGATCGACCTTGGCGTCAAGGCCG
GCGTGGTCGAGAAGTCGGGCGCCTGGTACTCCTACGGTGACGAGCGCATCGGCCAGGGCCGCGAGAACGCCAAGCAGTTC
CTGCGCGACCGCCCCGAGGTGGCCTTTGCCATCGAGGACAAGATCCGCGCCAGCCATGGCCTGGAATTCGGCGTCGGCGA
AGGGTCGGACAGCGGCGACGACGACTCGCTGACCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6TGJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

68.208

96.379

0.657
  recA Neisseria gonorrhoeae MS11

68.437

94.429

0.646
  recA Neisseria gonorrhoeae MS11

68.437

94.429

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.437

94.429

0.646
  recA Pseudomonas stutzeri DSM 10701

71.429

89.694

0.641
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.34

89.415

0.638
  recA Vibrio cholerae strain A1552

71.34

89.415

0.638
  recA Ralstonia pseudosolanacearum GMI1000

72.93

87.465

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.378

91.365

0.616
  recA Acinetobacter baylyi ADP1

68.847

89.415

0.616
  recA Acinetobacter baumannii D1279779

68.847

89.415

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

66.463

91.365

0.607
  recA Helicobacter pylori strain NCTC11637

66.564

90.808

0.604
  recA Helicobacter pylori 26695

65.951

90.808

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.031

90.808

0.591
  recA Streptococcus mitis SK321

61.243

94.15

0.577
  recA Streptococcus mitis NCTC 12261

60.947

94.15

0.574
  recA Streptococcus pneumoniae Rx1

60.947

94.15

0.574
  recA Streptococcus pneumoniae D39

60.947

94.15

0.574
  recA Streptococcus pneumoniae R6

60.947

94.15

0.574
  recA Streptococcus pneumoniae TIGR4

60.947

94.15

0.574
  recA Streptococcus pyogenes NZ131

59.644

93.872

0.56
  recA Streptococcus mutans UA159

59.467

94.15

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.172

94.15

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.429

90.808

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.816

90.808

0.543

Multiple sequence alignment