Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACIUZZ_RS09375 Genome accession   NZ_CP174122
Coordinates   2020886..2021971 (+) Length   361 a.a.
NCBI ID   WP_051355556.1    Uniprot ID   -
Organism   Acetobacterium dehalogenans DSM 11527     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015886..2026971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIUZZ_RS09360 (ACIUZZ_09360) rimO 2017621..2019000 (+) 1380 WP_026393172.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACIUZZ_RS09365 (ACIUZZ_09365) pgsA 2018984..2019523 (+) 540 WP_026393173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACIUZZ_RS09370 (ACIUZZ_09370) - 2019583..2020824 (+) 1242 WP_026393174.1 competence/damage-inducible protein A -
  ACIUZZ_RS09375 (ACIUZZ_09375) recA 2020886..2021971 (+) 1086 WP_051355556.1 recombinase RecA Machinery gene
  ACIUZZ_RS09380 (ACIUZZ_09380) rny 2022146..2023690 (+) 1545 WP_026393176.1 ribonuclease Y -
  ACIUZZ_RS09385 (ACIUZZ_09385) - 2023905..2024708 (+) 804 WP_026393177.1 TIGR00282 family metallophosphoesterase -
  ACIUZZ_RS09390 (ACIUZZ_09390) purB 2024781..2026214 (+) 1434 WP_026393178.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39063.42 Da        Isoelectric Point: 4.8072

>NTDB_id=1074424 ACIUZZ_RS09375 WP_051355556.1 2020886..2021971(+) (recA) [Acetobacterium dehalogenans DSM 11527]
MAEKTKTNNNEELTDKQKALDAALKNIERSFGKGAVMRLGDDAAKLNVEVISTSSIGLDMALGVGGVPRGRVVEIYGPES
SGKTTIALHIIAEAQKAGGNAAFVDAEHALDPTYAKALGVDIDNLLVAQPDTGEQAMEIVEALVRSNAIDVVVIDSVAAL
VPRAEIDGEMGDSHMGLQARLMSQALRKLTGVIKKSNTTTIFINQLREKIGVMFGNPETTTGGKALKFYASVRIDVRRIE
SLKKGTEIVGNRTRAKIVKNKIAPPFKQAEFDIMYGKGISKEGDLLDVGVDFGIVDKSGSWFSYNEQRLGQGRDNSKEYL
MANPEVANAIEKEIREKNAASKIVAEPEDIEENLMDDEDIE

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1074424 ACIUZZ_RS09375 WP_051355556.1 2020886..2021971(+) (recA) [Acetobacterium dehalogenans DSM 11527]
ATGGCTGAAAAAACGAAAACAAATAATAATGAAGAATTAACAGATAAACAAAAAGCTCTGGACGCGGCTCTGAAAAATAT
TGAAAGAAGTTTTGGCAAAGGTGCCGTAATGCGTCTGGGTGATGATGCGGCCAAATTAAATGTGGAAGTCATTTCAACCT
CTTCCATCGGTTTGGATATGGCACTGGGTGTCGGCGGTGTCCCCCGGGGACGCGTTGTCGAAATCTATGGTCCGGAATCT
TCAGGTAAAACGACGATCGCTCTGCATATCATTGCCGAAGCCCAAAAAGCTGGCGGAAATGCCGCCTTTGTTGATGCCGA
ACATGCGCTGGATCCCACCTATGCAAAAGCATTGGGGGTTGACATTGACAATTTGCTGGTGGCCCAACCGGATACCGGTG
AACAGGCCATGGAAATTGTTGAAGCCCTGGTCAGAAGTAACGCCATTGACGTTGTGGTTATTGACTCCGTTGCGGCTTTG
GTGCCCCGGGCTGAAATTGACGGTGAAATGGGCGATTCCCACATGGGACTCCAGGCTCGTTTGATGTCTCAGGCTTTGAG
AAAACTGACCGGGGTAATAAAAAAATCGAACACGACAACGATCTTCATTAATCAGTTGCGAGAAAAAATCGGAGTCATGT
TTGGTAATCCAGAAACAACAACTGGCGGAAAGGCACTTAAATTTTATGCTTCAGTGCGAATCGATGTCCGTCGGATTGAA
TCCCTGAAAAAGGGTACTGAAATTGTTGGTAACCGGACCCGGGCTAAAATTGTCAAGAACAAAATTGCACCGCCGTTTAA
GCAGGCAGAGTTTGACATCATGTATGGCAAAGGAATCTCCAAAGAAGGTGATCTACTCGATGTCGGTGTCGATTTCGGAA
TTGTTGATAAGTCGGGATCCTGGTTTTCTTATAATGAACAACGCTTGGGACAAGGCCGGGATAATTCAAAAGAATATCTG
ATGGCTAATCCAGAAGTTGCCAATGCCATCGAAAAAGAAATACGTGAAAAGAATGCCGCGAGTAAGATTGTTGCTGAACC
TGAAGACATCGAAGAAAACTTGATGGATGATGAAGATATTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.158

94.737

0.598
  recA Neisseria gonorrhoeae strain FA1090

64.157

91.967

0.59
  recA Neisseria gonorrhoeae MS11

64.157

91.967

0.59
  recA Neisseria gonorrhoeae MS11

64.157

91.967

0.59
  recA Vibrio cholerae strain A1552

63.205

93.352

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.205

93.352

0.59
  recA Acinetobacter baylyi ADP1

62.647

94.183

0.59
  recA Streptococcus pyogenes NZ131

61.383

96.122

0.59
  recA Helicobacter pylori 26695

65.635

89.474

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.722

93.629

0.587
  recA Pseudomonas stutzeri DSM 10701

61.696

94.737

0.584
  recA Helicobacter pylori strain NCTC11637

65.325

89.474

0.584
  recA Ralstonia pseudosolanacearum GMI1000

63.83

91.136

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

64.815

89.751

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

59.829

97.23

0.582
  recA Acinetobacter baumannii D1279779

64.087

89.474

0.573
  recA Streptococcus mutans UA159

59.884

95.291

0.571
  recA Glaesserella parasuis strain SC1401

60.117

94.46

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.184

95.014

0.562
  recA Streptococcus mitis SK321

61.656

90.305

0.557
  recA Streptococcus pneumoniae R6

61.28

90.859

0.557
  recA Streptococcus pneumoniae Rx1

61.28

90.859

0.557
  recA Streptococcus pneumoniae D39

61.28

90.859

0.557
  recA Streptococcus pneumoniae TIGR4

61.28

90.859

0.557
  recA Streptococcus mitis NCTC 12261

61.35

90.305

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

90.859

0.548

Multiple sequence alignment