Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACI703_RS12700 Genome accession   NZ_CP173765
Coordinates   2871514..2872551 (-) Length   345 a.a.
NCBI ID   WP_108768480.1    Uniprot ID   A0A3S7KEB7
Organism   Isoptericola jiangsuensis strain JSH01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2866514..2877551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI703_RS12675 (ACI703_12675) - 2866884..2867546 (+) 663 WP_406232019.1 DUF1684 domain-containing protein -
  ACI703_RS12685 (ACI703_12685) csrA 2867799..2868002 (-) 204 WP_079221459.1 carbon storage regulator CsrA -
  ACI703_RS12690 (ACI703_12690) alaS 2868154..2870802 (-) 2649 WP_406232021.1 alanine--tRNA ligase -
  ACI703_RS12695 (ACI703_12695) recX 2870914..2871402 (-) 489 WP_108768481.1 recombination regulator RecX -
  ACI703_RS12700 (ACI703_12700) recA 2871514..2872551 (-) 1038 WP_108768480.1 recombinase RecA Machinery gene
  ACI703_RS12705 (ACI703_12705) lexA 2872770..2873405 (-) 636 WP_079221455.1 transcriptional repressor LexA -
  ACI703_RS12710 (ACI703_12710) ubiB 2873561..2875243 (-) 1683 WP_406232025.1 2-polyprenylphenol 6-hydroxylase -
  ACI703_RS12715 (ACI703_12715) - 2875279..2875773 (-) 495 WP_420883704.1 CinA family protein -
  ACI703_RS12720 (ACI703_12720) - 2875841..2877148 (-) 1308 WP_108768477.1 MFS family transporter -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37136.61 Da        Isoelectric Point: 4.7662

>NTDB_id=1073981 ACI703_RS12700 WP_108768480.1 2871514..2872551(-) (recA) [Isoptericola jiangsuensis strain JSH01]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQGKDNARGYLRDNPTVAAKL
EAELREKFQPSEAAREEGDDDGDDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1073981 ACI703_RS12700 WP_108768480.1 2871514..2872551(-) (recA) [Isoptericola jiangsuensis strain JSH01]
ATGGACGAGAACAAAAAGCGCGCATTGGCTGCTGCTCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGTCGAACCCGTCGAAGCCATCCCGACCGGCTCGCTGATGCTCGACATCGCACTGGGCATCGGCG
GTCTGCCGAAGGGTCGTGTCGTTGAAATCTACGGTCCGGAGTCGTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGATGGGCGGCACCGCTGCCTTCATCGACGCCGAGCACGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
CGTGAACGTGGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTCCGTT
CGGGTTCGGTGGACATCCTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCGAAGGCGAAATGGGTGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGGTCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCCCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
AGGCATCAGCCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGGCCGGTGCCTGGTACAGCT
ACGGTGAAGAGCGCATCGGCCAGGGCAAGGACAACGCCCGCGGTTACCTGCGCGACAACCCGACCGTTGCCGCCAAGCTC
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCGTCCGAAGCCGCCCGCGAGGAAGGCGACGACGACGGCGACGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S7KEB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.072

96.522

0.696
  recA Acinetobacter baylyi ADP1

69.565

100

0.696
  recA Ralstonia pseudosolanacearum GMI1000

76.358

90.725

0.693
  recA Acinetobacter baumannii D1279779

71.951

95.072

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.779

94.493

0.678
  recA Vibrio cholerae strain A1552

71.779

94.493

0.678
  recA Glaesserella parasuis strain SC1401

65.407

99.71

0.652
  recA Neisseria gonorrhoeae MS11

68.405

94.493

0.646
  recA Neisseria gonorrhoeae MS11

68.405

94.493

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.405

94.493

0.646
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

96.812

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

99.71

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

62.388

97.101

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.203

0.591
  recA Helicobacter pylori strain NCTC11637

61.145

96.232

0.588
  recA Helicobacter pylori 26695

60.542

96.232

0.583
  recA Streptococcus mitis SK321

60.671

95.072

0.577
  recA Streptococcus pyogenes NZ131

59.697

95.652

0.571
  recA Streptococcus mutans UA159

59.697

95.652

0.571
  recA Streptococcus pneumoniae R6

60.061

95.072

0.571
  recA Streptococcus pneumoniae TIGR4

60.061

95.072

0.571
  recA Streptococcus pneumoniae D39

60.061

95.072

0.571
  recA Streptococcus mitis NCTC 12261

60.061

95.072

0.571
  recA Streptococcus pneumoniae Rx1

60.061

95.072

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.769

94.203

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

94.493

0.545

Multiple sequence alignment