Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACI7YU_RS05575 | Genome accession | NZ_CP173722 |
| Coordinates | 1297456..1298514 (+) | Length | 352 a.a. |
| NCBI ID | WP_024011876.1 | Uniprot ID | V8R9X0 |
| Organism | Pseudomonas siliginis strain P | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1267321..1298993 | 1297456..1298514 | within | 0 |
Gene organization within MGE regions
Location: 1267321..1298993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI7YU_RS05405 (ACI7YU_05405) | - | 1267321..1268217 (-) | 897 | WP_095180492.1 | LysR substrate-binding domain-containing protein | - |
| ACI7YU_RS05410 (ACI7YU_05410) | - | 1268334..1269446 (+) | 1113 | WP_129998774.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| ACI7YU_RS05415 (ACI7YU_05415) | fghA | 1269535..1270380 (+) | 846 | WP_039762487.1 | S-formylglutathione hydrolase | - |
| ACI7YU_RS05420 (ACI7YU_05420) | ispF | 1270424..1270897 (+) | 474 | WP_016771456.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| ACI7YU_RS05425 (ACI7YU_05425) | truD | 1270894..1271952 (+) | 1059 | WP_375123193.1 | tRNA pseudouridine(13) synthase TruD | - |
| ACI7YU_RS05430 (ACI7YU_05430) | surE | 1271940..1272689 (+) | 750 | WP_024011837.1 | 5'/3'-nucleotidase SurE | - |
| ACI7YU_RS05435 (ACI7YU_05435) | - | 1272728..1273363 (+) | 636 | WP_160768345.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| ACI7YU_RS05440 (ACI7YU_05440) | - | 1273575..1274444 (+) | 870 | WP_406228380.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ACI7YU_RS05445 (ACI7YU_05445) | rpoS | 1274551..1275558 (+) | 1008 | WP_016771451.1 | RNA polymerase sigma factor RpoS | - |
| ACI7YU_RS05450 (ACI7YU_05450) | fdxA | 1276086..1276409 (-) | 324 | WP_056783233.1 | ferredoxin FdxA | - |
| ACI7YU_RS05455 (ACI7YU_05455) | mutS | 1276573..1279155 (-) | 2583 | WP_056783236.1 | DNA mismatch repair protein MutS | - |
| ACI7YU_RS05460 (ACI7YU_05460) | - | 1279358..1280101 (+) | 744 | WP_056783238.1 | XRE family transcriptional regulator | - |
| ACI7YU_RS05465 (ACI7YU_05465) | - | 1280628..1280966 (+) | 339 | WP_024011844.1 | phage holin family protein | - |
| ACI7YU_RS05470 (ACI7YU_05470) | - | 1281119..1281703 (+) | 585 | WP_236168050.1 | hypothetical protein | - |
| ACI7YU_RS05475 (ACI7YU_05475) | - | 1281700..1281882 (+) | 183 | WP_024011856.1 | DUF2635 domain-containing protein | - |
| ACI7YU_RS05480 (ACI7YU_05480) | - | 1281882..1283378 (+) | 1497 | WP_305382324.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| ACI7YU_RS05485 (ACI7YU_05485) | - | 1283446..1283793 (+) | 348 | WP_007908779.1 | phage tail tube protein | - |
| ACI7YU_RS05490 (ACI7YU_05490) | - | 1283790..1284086 (+) | 297 | WP_024011858.1 | phage tail assembly protein | - |
| ACI7YU_RS05495 (ACI7YU_05495) | - | 1284217..1286106 (+) | 1890 | WP_406228384.1 | phage tail protein | - |
| ACI7YU_RS05500 (ACI7YU_05500) | - | 1286103..1287338 (+) | 1236 | WP_310214520.1 | DNA circularization N-terminal domain-containing protein | - |
| ACI7YU_RS05505 (ACI7YU_05505) | - | 1287343..1288392 (+) | 1050 | WP_252883262.1 | phage baseplate assembly protein | - |
| ACI7YU_RS05510 (ACI7YU_05510) | - | 1288544..1289053 (+) | 510 | WP_056783277.1 | phage baseplate assembly protein V | - |
| ACI7YU_RS05515 (ACI7YU_05515) | - | 1289053..1289451 (+) | 399 | WP_016771422.1 | phage GP46 family protein | - |
| ACI7YU_RS05520 (ACI7YU_05520) | - | 1289441..1290487 (+) | 1047 | WP_056783281.1 | baseplate J/gp47 family protein | - |
| ACI7YU_RS05525 (ACI7YU_05525) | - | 1290475..1291074 (+) | 600 | WP_041478090.1 | YmfQ family protein | - |
| ACI7YU_RS05530 (ACI7YU_05530) | - | 1291089..1292240 (+) | 1152 | WP_406228387.1 | phage tail protein | - |
| ACI7YU_RS05535 (ACI7YU_05535) | - | 1292237..1292752 (+) | 516 | WP_236168045.1 | phage tail protein | - |
| ACI7YU_RS05540 (ACI7YU_05540) | - | 1292897..1293823 (+) | 927 | WP_056783289.1 | hypothetical protein | - |
| ACI7YU_RS05545 (ACI7YU_05545) | - | 1293823..1294293 (+) | 471 | WP_406228389.1 | hypothetical protein | - |
| ACI7YU_RS05550 (ACI7YU_05550) | - | 1294293..1295180 (+) | 888 | WP_056783294.1 | hypothetical protein | - |
| ACI7YU_RS05555 (ACI7YU_05555) | - | 1295181..1295627 (+) | 447 | WP_236168043.1 | phage tail assembly chaperone | - |
| ACI7YU_RS05560 (ACI7YU_05560) | - | 1295741..1296307 (+) | 567 | WP_236168042.1 | glycoside hydrolase family 19 protein | - |
| ACI7YU_RS05565 (ACI7YU_05565) | - | 1296286..1296804 (+) | 519 | WP_236168041.1 | lysis system i-spanin subunit Rz | - |
| ACI7YU_RS05570 (ACI7YU_05570) | - | 1296872..1297372 (+) | 501 | WP_256810425.1 | CinA family protein | - |
| ACI7YU_RS05575 (ACI7YU_05575) | recA | 1297456..1298514 (+) | 1059 | WP_024011876.1 | recombinase RecA | Machinery gene |
| ACI7YU_RS05580 (ACI7YU_05580) | recX | 1298523..1298993 (+) | 471 | WP_056783304.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37462.00 Da Isoelectric Point: 5.3111
>NTDB_id=1073825 ACI7YU_RS05575 WP_024011876.1 1297456..1298514(+) (recA) [Pseudomonas siliginis strain P]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADL
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADL
Nucleotide
Download Length: 1059 bp
>NTDB_id=1073825 ACI7YU_RS05575 WP_024011876.1 1297456..1298514(+) (recA) [Pseudomonas siliginis strain P]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCTACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAGCACGCGCTCGATCCAGAGTACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCACTGGTGCCGAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCACGTCTGATGTCTCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATTTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAATAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
TTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTTGTCGAGAAGTCCGGCGCCTGGTACGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCTTGGCGGACAACCCGGAAATCGCCGCGAAGCTCGAGAAG
CAGCTGCGTGACAAGCTGCTGTCGCCAGCGGTGATCGCGGATTCCAAGGCCTCGGCGGTCAAAGAGACCGAAGACGACCT
GGCCGATGCTGATCTCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCTACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAGCACGCGCTCGATCCAGAGTACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCACTGGTGCCGAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCACGTCTGATGTCTCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATTTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAATAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
TTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTTGTCGAGAAGTCCGGCGCCTGGTACGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCTTGGCGGACAACCCGGAAATCGCCGCGAAGCTCGAGAAG
CAGCTGCGTGACAAGCTGCTGTCGCCAGCGGTGATCGCGGATTCCAAGGCCTCGGCGGTCAAAGAGACCGAAGACGACCT
GGCCGATGCTGATCTCTGA
Similar proteins
Only experimentally validated proteins are listed.