Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF2G4_RS10245 Genome accession   NZ_CP173698
Coordinates   2205627..2206697 (-) Length   356 a.a.
NCBI ID   WP_215845776.1    Uniprot ID   -
Organism   Pantoea sp. C3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2200627..2211697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2G4_RS10230 (ACF2G4_10230) csrA 2201798..2201983 (-) 186 WP_008927091.1 carbon storage regulator CsrA -
  ACF2G4_RS10235 (ACF2G4_10235) alaS 2202232..2204859 (-) 2628 WP_409074771.1 alanine--tRNA ligase -
  ACF2G4_RS10240 (ACF2G4_10240) - 2204995..2205507 (-) 513 WP_409074772.1 regulatory protein RecX -
  ACF2G4_RS10245 (ACF2G4_10245) recA 2205627..2206697 (-) 1071 WP_215845776.1 recombinase RecA Machinery gene
  ACF2G4_RS10250 (ACF2G4_10250) pncC 2206793..2207287 (-) 495 WP_243079082.1 nicotinamide-nucleotide amidase -
  ACF2G4_RS10255 (ACF2G4_10255) tam 2207391..2208167 (-) 777 WP_409074773.1 trans-aconitate 2-methyltransferase -
  ACF2G4_RS10260 (ACF2G4_10260) - 2208330..2209217 (+) 888 WP_409074774.1 dihydrodipicolinate synthase family protein -
  ACF2G4_RS10265 (ACF2G4_10265) - 2209253..2209588 (-) 336 WP_409074775.1 zinc ribbon domain-containing protein YjdM -
  ACF2G4_RS10270 (ACF2G4_10270) mltB 2209672..2210754 (-) 1083 WP_409074776.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38040.43 Da        Isoelectric Point: 4.8564

>NTDB_id=1073779 ACF2G4_RS10245 WP_215845776.1 2205627..2206697(-) (recA) [Pantoea sp. C3]
MAIDENKQKALAAALGQIEKQFGKGTIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRMVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGNFLKENPAIANEI
DQKLRDMLLNNSGESAPATESVDDAENVASEANEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1073779 ACF2G4_RS10245 WP_215845776.1 2205627..2206697(-) (recA) [Pantoea sp. C3]
ATGGCAATTGACGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTGGGCCAGATTGAGAAGCAATTTGGTAAAGGCACTAT
CATGCGCCTGGGTGAAGACCGCTCAATGGACGTGGAAACCATCTCTACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CAGGCGGTTTACCGATGGGACGTATGGTGGAAATCTACGGACCAGAGTCATCAGGTAAAACGACGCTGACATTGCAGGTT
ATTGCCTCAGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCAGAGCATGCACTGGATCCGGTTTACGCTAAAAA
GCTTGGTGTCGATATTGATAATCTGCTGTGTTCTCAGCCAGATACAGGTGAGCAAGCATTAGAGATCTGTGATGCGTTAG
CACGTTCAGGTGCTGTTGACGTTATCATTGTTGACTCCGTTGCTGCACTGACACCAAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCACATATGGGCCTTGCAGCACGTATGATGAGCCAGGCGATGCGTAAGCTTGCTGGTAACCTTAAGCAGTCCAA
CACTCTGCTGATTTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCACTGAAATTTTATGCTTCTGTTCGTCTGGACATCCGCCGTATTGGTGCGATTAAAGATGGCGACAACGTCGTCGGT
AGTGAGACGCGCGTTAAAGTGGTTAAAAACAAAATCGCTGCGCCATTTAAACAGGCCGAATTCCAGATCATGTATGGCGA
AGGCATTAACATCTTTGGTGAACTGGTCGATTTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCGTGGTATAGTT
ATAACGGCGATAAGATTGGTCAAGGTAAAGCGAATGCGGGTAACTTCTTGAAAGAGAATCCAGCAATCGCAAACGAAATC
GATCAGAAACTGCGTGATATGCTGCTTAATAATAGCGGTGAATCTGCGCCAGCAACTGAGTCTGTTGATGACGCTGAAAA
CGTTGCGAGCGAAGCTAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.37

97.191

0.801
  recA Vibrio cholerae strain A1552

82.37

97.191

0.801
  recA Pseudomonas stutzeri DSM 10701

71.965

97.191

0.699
  recA Acinetobacter baumannii D1279779

71.302

94.944

0.677
  recA Glaesserella parasuis strain SC1401

68.661

98.596

0.677
  recA Acinetobacter baylyi ADP1

69.883

96.067

0.671
  recA Neisseria gonorrhoeae MS11

68.827

91.011

0.626
  recA Neisseria gonorrhoeae MS11

68.827

91.011

0.626
  recA Neisseria gonorrhoeae strain FA1090

68.827

91.011

0.626
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.36

0.61
  recA Streptococcus pneumoniae D39

59.207

99.157

0.587
  recA Streptococcus pneumoniae TIGR4

59.207

99.157

0.587
  recA Streptococcus pneumoniae R6

59.207

99.157

0.587
  recA Streptococcus pneumoniae Rx1

59.207

99.157

0.587
  recA Helicobacter pylori strain NCTC11637

61.747

93.258

0.576
  recA Helicobacter pylori 26695

61.446

93.258

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

61.702

92.416

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.854

0.567
  recA Streptococcus mutans UA159

62.154

91.292

0.567
  recA Streptococcus mitis NCTC 12261

62.229

90.73

0.565
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Streptococcus mitis SK321

61.92

90.73

0.562
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.73

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

91.292

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

91.573

0.539

Multiple sequence alignment