Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACI5FU_RS07110 Genome accession   NZ_CP173687
Coordinates   1415563..1416720 (-) Length   385 a.a.
NCBI ID   WP_011679405.1    Uniprot ID   A0A222YC38
Organism   Leuconostoc mesenteroides strain DMLM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410563..1421720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5FU_RS07090 (ACI5FU_07090) - 1411193..1412074 (-) 882 WP_014324427.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  ACI5FU_RS07095 (ACI5FU_07095) - 1412216..1413556 (-) 1341 WP_041775151.1 cell wall metabolism sensor histidine kinase WalK -
  ACI5FU_RS07100 (ACI5FU_07100) - 1413640..1414548 (-) 909 WP_014324425.1 phosphate ABC transporter substrate-binding protein -
  ACI5FU_RS07105 (ACI5FU_07105) - 1414788..1415480 (-) 693 WP_135399852.1 response regulator transcription factor -
  ACI5FU_RS07110 (ACI5FU_07110) recA 1415563..1416720 (-) 1158 WP_011679405.1 recombinase RecA Machinery gene
  ACI5FU_RS07115 (ACI5FU_07115) pgsA 1416860..1417441 (-) 582 WP_010285285.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI5FU_RS07120 (ACI5FU_07120) - 1417452..1418327 (-) 876 WP_014324424.1 RodZ family helix-turn-helix domain-containing protein -
  ACI5FU_RS07125 (ACI5FU_07125) yfmH 1418342..1419613 (-) 1272 WP_405465150.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACI5FU_RS07130 (ACI5FU_07130) yfmF 1419615..1420880 (-) 1266 WP_135399854.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41325.72 Da        Isoelectric Point: 4.8063

>NTDB_id=1073676 ACI5FU_RS07110 WP_011679405.1 1415563..1416720(-) (recA) [Leuconostoc mesenteroides strain DMLM18]
MVAKKTTKKDDQAKKDGRRAALDEALKKIEKNFGKGSVMTLGDNALTQIETIPSGSVKIDVALGVGGYPKGRIIEVYGPE
SSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAA
LVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRS
TQIKDGTDVTGNLTKVKIVKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGREKAKDY
LDDPEHAALRQELYVKVRQAYGIDSNANGTAVSNTEAQAEKSDEQINLPDLDTTTDDSLTDEPIV

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1073676 ACI5FU_RS07110 WP_011679405.1 1415563..1416720(-) (recA) [Leuconostoc mesenteroides strain DMLM18]
ATGGTAGCAAAGAAAACGACTAAAAAAGACGATCAAGCAAAGAAAGATGGTCGTCGAGCCGCGCTAGATGAAGCGCTAAA
GAAAATTGAAAAGAACTTTGGGAAAGGTTCAGTGATGACGTTAGGAGATAACGCGCTAACGCAGATCGAAACGATCCCTT
CTGGTTCTGTTAAAATTGATGTTGCTTTGGGTGTTGGTGGCTATCCCAAGGGGCGTATTATTGAAGTATACGGTCCAGAA
TCATCAGGTAAAACAACCATCGCACTTCATGCAGTTGCTGAAGTTCAAAAGCAAGGCGGAACGGCTGCCTATATTGATGC
TGAAAATGCTTTGGACGTTAAATATGCTGAAGCCCTCGGCGTTAAAAAAGACGAATTACTTTTGTCACAACCGGATACAG
GCGAACAGGGATTAGAAATTGCTGATGCTTTGGTACAATCAGGTGCCGTAGATATGATTGTTGTTGACTCAGTTGCTGCA
TTAGTACCTCGTGCCGAAATCGAAGGTGAAATGGGTGATGCGCACGTTGGATTGCAAGCTCGTTTAATGAGTCAAGCACT
ACGTAAGTTAGCAGGAACCCTGAACCGAACGGGAACAATTGCTATTTTCATCAATCAAATTCGTGAAAAAGTCGGCGTAA
TGTTTGGAAACCCAGAAACTACACCCGGTGGTCGTGCACTAAAGTTTTATTCGACAGTACGTTTAGAAGTTAGACGTTCA
ACACAAATTAAAGACGGTACTGATGTCACTGGTAATTTGACAAAAGTTAAAATTGTTAAAAACAAGGTGGCTCCACCATT
CAAAGTTGCTGAAGTTGATATTATGTATGGCCATGGTATTTCACAAACTGGTGAAATTCTTGATCTCGCTGTTGATCAAG
ATATTATCGACAAAGCAGGTGCATGGTATGCTTACGAAGGTGAACGAATTGGTCAAGGGCGTGAGAAAGCTAAAGACTAT
TTGGATGATCCTGAGCATGCCGCATTGCGACAAGAACTATATGTCAAGGTGCGTCAAGCATATGGTATTGATTCTAATGC
GAATGGTACTGCCGTTTCAAATACGGAGGCTCAAGCAGAAAAATCTGATGAGCAAATTAATCTGCCGGATTTGGATACAA
CGACTGATGATTCTTTAACGGACGAACCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222YC38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

73.889

93.506

0.691
  recA Streptococcus mitis SK321

64

97.403

0.623
  recA Streptococcus mitis NCTC 12261

63.733

97.403

0.621
  recA Streptococcus mutans UA159

61.558

100

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

71.125

85.455

0.608
  recA Streptococcus pyogenes NZ131

67.147

90.13

0.605
  recA Streptococcus pneumoniae R6

63.315

95.584

0.605
  recA Streptococcus pneumoniae TIGR4

63.315

95.584

0.605
  recA Streptococcus pneumoniae D39

63.315

95.584

0.605
  recA Streptococcus pneumoniae Rx1

63.315

95.584

0.605
  recA Lactococcus lactis subsp. cremoris KW2

65.616

90.649

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.538

89.87

0.535
  recA Ralstonia pseudosolanacearum GMI1000

64.444

81.818

0.527
  recA Glaesserella parasuis strain SC1401

54.645

95.065

0.519
  recA Pseudomonas stutzeri DSM 10701

57.514

89.87

0.517
  recA Acinetobacter baylyi ADP1

60.245

84.935

0.512
  recA Acinetobacter baumannii D1279779

60.494

84.156

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.864

87.532

0.506
  recA Neisseria gonorrhoeae strain FA1090

57.692

87.792

0.506
  recA Neisseria gonorrhoeae MS11

57.692

87.792

0.506
  recA Neisseria gonorrhoeae MS11

57.692

87.792

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

84.156

0.501
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.703

81.299

0.494
  recA Vibrio cholerae strain A1552

60.703

81.299

0.494
  recA Helicobacter pylori strain NCTC11637

57.055

84.675

0.483
  recA Helicobacter pylori 26695

57.055

84.675

0.483

Multiple sequence alignment