Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACI513_RS16845 Genome accession   NZ_CP173626
Coordinates   3636115..3637119 (+) Length   334 a.a.
NCBI ID   WP_074230138.1    Uniprot ID   A0A653PL25
Organism   Chryseobacterium sp. M5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3631115..3642119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI513_RS16830 (ACI513_16830) - 3631493..3631942 (+) 450 WP_404984985.1 hypothetical protein -
  ACI513_RS16835 (ACI513_16835) - 3631961..3634159 (+) 2199 WP_404984986.1 reprolysin-like metallopeptidase -
  ACI513_RS16840 (ACI513_16840) - 3634279..3635475 (+) 1197 WP_404984987.1 oxygenase MpaB family protein -
  ACI513_RS16845 (ACI513_16845) recA 3636115..3637119 (+) 1005 WP_074230138.1 recombinase RecA Machinery gene
  ACI513_RS16850 (ACI513_16850) htpG 3637316..3639208 (+) 1893 WP_404984988.1 molecular chaperone HtpG -
  ACI513_RS16855 (ACI513_16855) - 3639318..3640118 (-) 801 WP_404984989.1 alpha/beta hydrolase -
  ACI513_RS16860 (ACI513_16860) - 3640258..3640554 (-) 297 WP_404987282.1 MGMT family protein -
  ACI513_RS16865 (ACI513_16865) - 3640722..3641513 (+) 792 WP_404984990.1 glucose 1-dehydrogenase -
  ACI513_RS16870 (ACI513_16870) - 3641646..3641792 (+) 147 WP_404984991.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35809.13 Da        Isoelectric Point: 5.5619

>NTDB_id=1073334 ACI513_RS16845 WP_074230138.1 3636115..3637119(+) (recA) [Chryseobacterium sp. M5]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDDAVDTTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATINRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKASAPIKNGDEA
IGSRVKVKVVKNKVAPPFKMAEFDIMYGEGVSKTGEILDTAVDMGVVKKSGSWFSYGETKLGQGRDAVRDLLKDNPELAE
ELENKVKEEIANKK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1073334 ACI513_RS16845 WP_074230138.1 3636115..3637119(+) (recA) [Chryseobacterium sp. M5]
ATGAGCAACATAGATGATAAGAAAAAAGCACTTGCATTGGTGCTTGACAAGTTAGATAAAACATACGGAAAGGGAACTGT
AATGACTTTGGGGGATGATGCAGTTGATACAACTATCGAAGTAATTCCGTCTGGATCATTAGGATTAGACATCGCTTTAG
GTGTTGGTGGATATCCTAGAGGAAGAATCATTGAAATCTACGGACCGGAATCTTCAGGGAAAACAACGTTAACGCTTCAT
GCGATTGCTGAAGCTCAAAAAGCGGGTGGAATAGCAGCGTTTATTGATGCTGAGCACGCTTTCGACAGAGGGTATGCTGC
AAAATTAGGAATCGATCTAGAAAACCTGATTATTTCTCAGCCAGACAACGGTGAACAAGCTTTGGAAATTGCTGATAACC
TGATTCGTTCAGGAGCAATCGACATTGTGGTAATTGACTCTGTTGCTGCATTGACTCCAAAAGCAGAGATTGAAGGGGAA
ATGGGAGATTCTAAAATGGGTCTTCATGCAAGATTGATGTCTCAGGCATTAAGAAAATTAACTGCAACTATTAACAGAAC
AAAATGTACGGTAATTTTCATCAACCAGTTGAGAGAAAAGATTGGTGTAATGTTCGGAAATCCTGAAACAACAACCGGTG
GTAATGCGCTGAAATTTTACGCTTCTGTAAGATTAGATATCAGAAAAGCAAGCGCACCAATTAAGAATGGTGATGAAGCT
ATCGGTAGCCGTGTGAAAGTGAAAGTCGTAAAGAATAAAGTGGCTCCACCTTTCAAAATGGCAGAATTTGACATTATGTA
TGGTGAAGGAGTTTCTAAAACCGGAGAAATCTTAGATACAGCTGTTGATATGGGAGTTGTGAAGAAAAGCGGTTCTTGGT
TCAGCTACGGTGAAACTAAGCTAGGGCAGGGTCGTGATGCTGTGAGAGATTTATTGAAAGACAATCCTGAATTAGCAGAA
GAACTTGAAAATAAAGTAAAAGAAGAAATTGCTAACAAAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653PL25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.58

99.701

0.793
  recA Acinetobacter baylyi ADP1

64.134

98.503

0.632
  recA Glaesserella parasuis strain SC1401

64.134

98.503

0.632
  recA Ralstonia pseudosolanacearum GMI1000

67.412

93.713

0.632
  recA Acinetobacter baumannii D1279779

64.11

97.605

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

97.904

0.623
  recA Helicobacter pylori strain NCTC11637

62.31

98.503

0.614
  recA Helicobacter pylori 26695

62.31

98.503

0.614
  recA Neisseria gonorrhoeae MS11

63.158

96.707

0.611
  recA Neisseria gonorrhoeae MS11

63.158

96.707

0.611
  recA Neisseria gonorrhoeae strain FA1090

63.158

96.707

0.611
  recA Streptococcus mitis NCTC 12261

60

100

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

62.27

97.605

0.608
  recA Streptococcus pyogenes NZ131

61.35

97.605

0.599
  recA Vibrio cholerae strain A1552

60.79

98.503

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.79

98.503

0.599
  recA Streptococcus mitis SK321

61.231

97.305

0.596
  recA Pseudomonas stutzeri DSM 10701

60.736

97.605

0.593
  recA Lactococcus lactis subsp. cremoris KW2

60.736

97.605

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.3

96.707

0.593
  recA Streptococcus pneumoniae Rx1

60.615

97.305

0.59
  recA Streptococcus pneumoniae D39

60.615

97.305

0.59
  recA Streptococcus pneumoniae R6

60.615

97.305

0.59
  recA Streptococcus pneumoniae TIGR4

60.615

97.305

0.59
  recA Streptococcus mutans UA159

60.429

97.605

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

97.305

0.554

Multiple sequence alignment