Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AACH44_RS15185 | Genome accession | NZ_AP028908 |
| Coordinates | 3342613..3343686 (-) | Length | 357 a.a. |
| NCBI ID | WP_048257822.1 | Uniprot ID | A0AAN0KJG4 |
| Organism | Pectobacterium araliae strain MAFF 302110 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3338793..3381223 | 3342613..3343686 | within | 0 |
Gene organization within MGE regions
Location: 3338793..3381223
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH44_RS15170 (PEC302110_29620) | csrA | 3338793..3338978 (-) | 186 | WP_005972168.1 | carbon storage regulator CsrA | - |
| AACH44_RS15175 (PEC302110_29630) | alaS | 3339301..3341928 (-) | 2628 | WP_261850064.1 | alanine--tRNA ligase | - |
| AACH44_RS15180 (PEC302110_29640) | recX | 3342067..3342567 (-) | 501 | WP_261850063.1 | recombination regulator RecX | - |
| AACH44_RS15185 (PEC302110_29650) | recA | 3342613..3343686 (-) | 1074 | WP_048257822.1 | recombinase RecA | Machinery gene |
| AACH44_RS15190 (PEC302110_29660) | pncC | 3343794..3344288 (-) | 495 | WP_261850062.1 | nicotinamide-nucleotide amidase | - |
| AACH44_RS15195 (PEC302110_29670) | - | 3344527..3344862 (-) | 336 | WP_261850061.1 | hypothetical protein | - |
| AACH44_RS15200 (PEC302110_29680) | - | 3345102..3346139 (-) | 1038 | WP_338659257.1 | IS630 family transposase | - |
| AACH44_RS15205 (PEC302110_29690) | - | 3346293..3347327 (+) | 1035 | WP_261850241.1 | IS110 family transposase | - |
| AACH44_RS15210 (PEC302110_29700) | - | 3347846..3348334 (+) | 489 | WP_261850182.1 | SRPBCC family protein | - |
| AACH44_RS15215 (PEC302110_29710) | - | 3348409..3349083 (+) | 675 | WP_261850183.1 | MarC family NAAT transporter | - |
| AACH44_RS15220 (PEC302110_29720) | - | 3349266..3349700 (+) | 435 | WP_261850184.1 | hypothetical protein | - |
| AACH44_RS15225 (PEC302110_29730) | - | 3349739..3350863 (+) | 1125 | WP_261850185.1 | diguanylate cyclase | - |
| AACH44_RS15230 (PEC302110_29750) | grxB | 3351385..3352020 (+) | 636 | WP_261850186.1 | glutaredoxin 2 | - |
| AACH44_RS15235 | - | 3352155..3353182 (-) | 1028 | Protein_2976 | nucleotide disphospho-sugar-binding domain-containing protein | - |
| AACH44_RS15240 (PEC302110_29780) | - | 3353194..3354045 (-) | 852 | WP_261850188.1 | TauD/TfdA family dioxygenase | - |
| AACH44_RS15245 (PEC302110_29790) | pvcA | 3354114..3355079 (-) | 966 | WP_261850187.1 | L-tyrosine isonitrile synthase | - |
| AACH44_RS15250 (PEC302110_29800) | - | 3355282..3355533 (+) | 252 | WP_261850230.1 | type I toxin-antitoxin system SymE family toxin | - |
| AACH44_RS15255 (PEC302110_29810) | - | 3355592..3355960 (-) | 369 | WP_261850229.1 | barstar family protein | - |
| AACH44_RS15260 (PEC302110_29820) | - | 3355973..3356275 (-) | 303 | WP_261850228.1 | ribonuclease domain-containing protein | - |
| AACH44_RS15265 | - | 3356691..3357041 (-) | 351 | WP_261850227.1 | hypothetical protein | - |
| AACH44_RS15270 (PEC302110_29830) | xerC | 3357410..3358453 (-) | 1044 | WP_338659312.1 | site-specific tyrosine recombinase XerC | - |
| AACH44_RS15275 (PEC302110_29840) | - | 3358498..3361392 (-) | 2895 | WP_338659313.1 | DNA primase | - |
| AACH44_RS15280 (PEC302110_29850) | - | 3361545..3361916 (+) | 372 | WP_261850223.1 | helix-turn-helix domain-containing protein | - |
| AACH44_RS15285 (PEC302110_29860) | - | 3361995..3362219 (+) | 225 | WP_129709937.1 | SymE family type I addiction module toxin | - |
| AACH44_RS15290 (PEC302110_29870) | - | 3362280..3362651 (-) | 372 | WP_338659314.1 | hypothetical protein | - |
| AACH44_RS15295 | - | 3363282..3363632 (-) | 351 | WP_261850227.1 | hypothetical protein | - |
| AACH44_RS15300 (PEC302110_29890) | xerC | 3364001..3365044 (-) | 1044 | WP_338659312.1 | site-specific tyrosine recombinase XerC | - |
| AACH44_RS15305 (PEC302110_29900) | - | 3365089..3367983 (-) | 2895 | WP_338659313.1 | DNA primase | - |
| AACH44_RS15310 (PEC302110_29910) | - | 3368136..3368507 (+) | 372 | WP_261850223.1 | helix-turn-helix domain-containing protein | - |
| AACH44_RS15315 (PEC302110_29920) | - | 3368586..3368810 (+) | 225 | WP_129709937.1 | SymE family type I addiction module toxin | - |
| AACH44_RS15320 (PEC302110_29930) | - | 3368871..3369242 (-) | 372 | WP_338659314.1 | hypothetical protein | - |
| AACH44_RS15325 (PEC302110_29940) | - | 3369239..3374308 (-) | 5070 | WP_338659315.1 | RHS repeat-associated core domain-containing protein | - |
| AACH44_RS15330 (PEC302110_29950) | - | 3374329..3375246 (-) | 918 | WP_261848821.1 | DUF4123 domain-containing protein | - |
| AACH44_RS15335 (PEC302110_29960) | - | 3375243..3376199 (-) | 957 | WP_261848820.1 | DUF4123 domain-containing protein | - |
| AACH44_RS15340 (PEC302110_29970) | - | 3376356..3377054 (-) | 699 | WP_261848828.1 | ankyrin repeat domain-containing protein | - |
| AACH44_RS15345 (PEC302110_29980) | - | 3377135..3378508 (-) | 1374 | WP_261848819.1 | PAAR domain-containing protein | - |
| AACH44_RS15350 (PEC302110_29990) | - | 3378670..3379017 (-) | 348 | WP_261848818.1 | hypothetical protein | - |
| AACH44_RS15355 (PEC302110_30010) | - | 3379187..3381223 (-) | 2037 | WP_261848817.1 | type VI secretion system tip protein VgrG | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 38260.73 Da Isoelectric Point: 5.0716
>NTDB_id=107284 AACH44_RS15185 WP_048257822.1 3342613..3343686(-) (recA) [Pectobacterium araliae strain MAFF 302110]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTIAAEL
DKKLREMLLHKGNELTPAAAGNSHDEDEFAGEGNEEF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTIAAEL
DKKLREMLLHKGNELTPAAAGNSHDEDEFAGEGNEEF
Nucleotide
Download Length: 1074 bp
>NTDB_id=107284 AACH44_RS15185 WP_048257822.1 3342613..3343686(-) (recA) [Pectobacterium araliae strain MAFF 302110]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCCTTGATATCGCCCTGGGCG
CCGGCGGTTTACCGATGGGGCGTATCGTTGAGATCTATGGCCCAGAATCTTCCGGTAAAACCACGCTGACCCTACAGGTG
ATCGCTGCCGCTCAGCGCGAAGGTAAAACCTGTGCATTCATCGATGCTGAACATGCATTGGACCCAATTTATGCGAAAAA
GTTGGGTGTAGATATTGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAGGCGTTGGAGATTTGTGATGCGCTTA
CGCGTTCTGGCGCTGTTGACGTTATCATTGTCGACTCTGTCGCTGCCTTGACGCCGAAAGCTGAAATTGAAGGTGAAATC
GGTGACTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAAGCTATGCGTAAGCTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAACCCTGAAACCACCACTGGCGGTA
ATGCCCTGAAATTTTACGCTTCTGTTCGTTTAGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAAGAAGTTGTCGGC
AGTGAAACCCGCGTTAAAGTCGTGAAGAATAAAGTCGCGGCGCCGTTCAAGCAGGCTGAGTTCCAAATTTTGTACGGTGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCCGGTGCCTGGTATAGCT
ATAACGGCGATAAGATCGGTCAGGGTAAAGCAAACGCCTGTAATTTCCTGAAAGAGAATCCAACGATTGCTGCTGAGCTG
GATAAAAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTAACGCCTGCCGCAGCAGGTAATAGCCATGATGAAGA
TGAATTCGCAGGTGAAGGCAACGAAGAATTTTAA
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCCTTGATATCGCCCTGGGCG
CCGGCGGTTTACCGATGGGGCGTATCGTTGAGATCTATGGCCCAGAATCTTCCGGTAAAACCACGCTGACCCTACAGGTG
ATCGCTGCCGCTCAGCGCGAAGGTAAAACCTGTGCATTCATCGATGCTGAACATGCATTGGACCCAATTTATGCGAAAAA
GTTGGGTGTAGATATTGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAGGCGTTGGAGATTTGTGATGCGCTTA
CGCGTTCTGGCGCTGTTGACGTTATCATTGTCGACTCTGTCGCTGCCTTGACGCCGAAAGCTGAAATTGAAGGTGAAATC
GGTGACTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAAGCTATGCGTAAGCTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAACCCTGAAACCACCACTGGCGGTA
ATGCCCTGAAATTTTACGCTTCTGTTCGTTTAGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAAGAAGTTGTCGGC
AGTGAAACCCGCGTTAAAGTCGTGAAGAATAAAGTCGCGGCGCCGTTCAAGCAGGCTGAGTTCCAAATTTTGTACGGTGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCCGGTGCCTGGTATAGCT
ATAACGGCGATAAGATCGGTCAGGGTAAAGCAAACGCCTGTAATTTCCTGAAAGAGAATCCAACGATTGCTGCTGAGCTG
GATAAAAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTAACGCCTGCCGCAGCAGGTAATAGCCATGATGAAGA
TGAATTCGCAGGTGAAGGCAACGAAGAATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.