Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | RE428_RS15665 | Genome accession | NZ_AP028878 |
| Coordinates | 3516886..3517932 (-) | Length | 348 a.a. |
| NCBI ID | WP_004578747.1 | Uniprot ID | N6WAD6 |
| Organism | Marinobacter nanhaiticus D15-8W | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3518703..3572163 | 3516886..3517932 | flank | 771 |
Gene organization within MGE regions
Location: 3516886..3572163
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RE428_RS15665 (RE428_31670) | recA | 3516886..3517932 (-) | 1047 | WP_004578747.1 | recombinase RecA | Machinery gene |
| RE428_RS15670 (RE428_31680) | pncC | 3518080..3518583 (-) | 504 | WP_004578748.1 | nicotinamide-nucleotide amidase | - |
| RE428_RS15675 (RE428_31690) | - | 3518703..3519608 (-) | 906 | WP_004578749.1 | transglutaminase family protein | - |
| RE428_RS15680 (RE428_31700) | - | 3519621..3522101 (-) | 2481 | WP_004578750.1 | circularly permuted type 2 ATP-grasp protein | - |
| RE428_RS15685 (RE428_31710) | - | 3522137..3523069 (-) | 933 | WP_004578751.1 | alpha-E domain-containing protein | - |
| RE428_RS15690 (RE428_31720) | - | 3523073..3524530 (-) | 1458 | WP_004578752.1 | circularly permuted type 2 ATP-grasp protein | - |
| RE428_RS15695 (RE428_31730) | - | 3525223..3525432 (+) | 210 | WP_004582871.1 | hypothetical protein | - |
| RE428_RS15700 (RE428_31740) | - | 3525527..3527686 (-) | 2160 | WP_004582872.1 | hypothetical protein | - |
| RE428_RS15705 (RE428_31750) | - | 3527755..3534297 (-) | 6543 | WP_004582873.1 | hypothetical protein | - |
| RE428_RS15710 (RE428_31760) | - | 3534322..3534618 (+) | 297 | WP_004582874.1 | hypothetical protein | - |
| RE428_RS15715 (RE428_31770) | - | 3534569..3536260 (-) | 1692 | WP_004582875.1 | hypothetical protein | - |
| RE428_RS15720 (RE428_31780) | - | 3536305..3536757 (-) | 453 | WP_154660774.1 | hypothetical protein | - |
| RE428_RS15725 (RE428_31790) | - | 3536745..3537110 (-) | 366 | WP_004582877.1 | hypothetical protein | - |
| RE428_RS15730 (RE428_31800) | - | 3537097..3539748 (-) | 2652 | WP_115840361.1 | hypothetical protein | - |
| RE428_RS15735 (RE428_31810) | - | 3539748..3540395 (-) | 648 | WP_004582879.1 | hypothetical protein | - |
| RE428_RS15740 (RE428_31820) | - | 3540392..3540811 (-) | 420 | WP_004582880.1 | hypothetical protein | - |
| RE428_RS15745 (RE428_31830) | - | 3540888..3541163 (-) | 276 | WP_004582881.1 | hypothetical protein | - |
| RE428_RS15750 (RE428_31840) | - | 3541223..3542071 (-) | 849 | WP_004582882.1 | phage capsid protein | - |
| RE428_RS15755 (RE428_31850) | - | 3542261..3543214 (-) | 954 | WP_338381146.1 | hypothetical protein | - |
| RE428_RS15760 (RE428_31860) | - | 3543280..3543558 (-) | 279 | WP_004582885.1 | hypothetical protein | - |
| RE428_RS15765 (RE428_31870) | - | 3543555..3545198 (-) | 1644 | WP_004582886.1 | portal protein | - |
| RE428_RS15770 (RE428_31880) | - | 3545199..3545456 (-) | 258 | WP_004582887.1 | hypothetical protein | - |
| RE428_RS15775 (RE428_31890) | - | 3545456..3547051 (-) | 1596 | WP_004582888.1 | terminase family protein | - |
| RE428_RS15780 (RE428_31900) | - | 3547038..3547598 (-) | 561 | WP_004582889.1 | hypothetical protein | - |
| RE428_RS15785 (RE428_31910) | - | 3547604..3547927 (-) | 324 | WP_004582890.1 | hypothetical protein | - |
| RE428_RS15790 (RE428_31920) | - | 3547927..3548394 (-) | 468 | WP_004582891.1 | hypothetical protein | - |
| RE428_RS15795 (RE428_31930) | - | 3548394..3549152 (-) | 759 | WP_004582892.1 | hypothetical protein | - |
| RE428_RS15800 (RE428_31940) | - | 3549154..3550632 (-) | 1479 | WP_338381147.1 | heparin lyase I family protein | - |
| RE428_RS15805 (RE428_31950) | - | 3550742..3551623 (+) | 882 | WP_338381148.1 | ATP-grasp fold amidoligase family protein | - |
| RE428_RS15810 (RE428_31960) | - | 3551626..3551868 (-) | 243 | WP_004582896.1 | hypothetical protein | - |
| RE428_RS15815 (RE428_31970) | - | 3551865..3552299 (-) | 435 | WP_004582897.1 | holin family protein | - |
| RE428_RS15820 (RE428_31980) | - | 3552296..3552787 (-) | 492 | WP_004582898.1 | glycosyl hydrolase 108 family protein | - |
| RE428_RS15825 (RE428_31990) | - | 3552937..3553452 (-) | 516 | WP_004582899.1 | hypothetical protein | - |
| RE428_RS15830 (RE428_32000) | - | 3553498..3553704 (-) | 207 | WP_004582900.1 | hypothetical protein | - |
| RE428_RS15835 (RE428_32010) | - | 3553701..3554132 (-) | 432 | WP_004582901.1 | dATP/dGTP diphosphohydrolase domain-containing protein | - |
| RE428_RS15840 (RE428_32020) | - | 3554129..3555400 (-) | 1272 | WP_004582902.1 | hypothetical protein | - |
| RE428_RS15845 (RE428_32030) | - | 3555397..3555951 (-) | 555 | WP_040883755.1 | recombination protein NinG | - |
| RE428_RS15850 (RE428_32050) | - | 3556146..3556403 (-) | 258 | WP_004582905.1 | hypothetical protein | - |
| RE428_RS15855 (RE428_32060) | - | 3556438..3556614 (-) | 177 | WP_154660776.1 | hypothetical protein | - |
| RE428_RS15860 (RE428_32070) | - | 3556614..3557084 (-) | 471 | WP_004582906.1 | hypothetical protein | - |
| RE428_RS15865 (RE428_32080) | - | 3557081..3557377 (-) | 297 | WP_004582907.1 | hypothetical protein | - |
| RE428_RS15870 (RE428_32090) | - | 3557374..3557607 (-) | 234 | WP_004582908.1 | hypothetical protein | - |
| RE428_RS15875 (RE428_32100) | - | 3557604..3557843 (-) | 240 | WP_004582909.1 | hypothetical protein | - |
| RE428_RS15880 (RE428_32110) | - | 3557840..3558427 (-) | 588 | WP_004582910.1 | HNH endonuclease signature motif containing protein | - |
| RE428_RS15885 (RE428_32120) | - | 3558424..3558891 (-) | 468 | WP_004582911.1 | hypothetical protein | - |
| RE428_RS15890 (RE428_32130) | - | 3559069..3559233 (-) | 165 | WP_154660777.1 | hypothetical protein | - |
| RE428_RS15895 (RE428_32140) | - | 3559230..3559724 (-) | 495 | WP_004582913.1 | hypothetical protein | - |
| RE428_RS15900 (RE428_32150) | - | 3559721..3560017 (-) | 297 | WP_004582914.1 | hypothetical protein | - |
| RE428_RS15905 (RE428_32160) | dnaB | 3560014..3561390 (-) | 1377 | WP_004582915.1 | replicative DNA helicase | - |
| RE428_RS15910 (RE428_32170) | - | 3561387..3562220 (-) | 834 | WP_004582916.1 | DUF1376 domain-containing protein | - |
| RE428_RS15915 (RE428_32180) | - | 3562220..3562444 (-) | 225 | WP_004582917.1 | hypothetical protein | - |
| RE428_RS15920 (RE428_32200) | - | 3563128..3563484 (+) | 357 | WP_004582919.1 | helix-turn-helix transcriptional regulator | - |
| RE428_RS15925 (RE428_32210) | - | 3563573..3563758 (+) | 186 | WP_004582920.1 | hypothetical protein | - |
| RE428_RS15930 (RE428_32220) | - | 3563897..3564298 (+) | 402 | WP_004582921.1 | response regulator transcription factor | - |
| RE428_RS15935 (RE428_32230) | - | 3564295..3564573 (+) | 279 | WP_004582922.1 | hypothetical protein | - |
| RE428_RS15940 (RE428_32260) | - | 3564975..3565364 (+) | 390 | WP_004582924.1 | hypothetical protein | - |
| RE428_RS15945 (RE428_32270) | - | 3565361..3566212 (+) | 852 | WP_004582925.1 | ERF family protein | - |
| RE428_RS15950 (RE428_32280) | - | 3566212..3566466 (+) | 255 | WP_004582926.1 | hypothetical protein | - |
| RE428_RS15955 (RE428_32290) | - | 3566463..3566837 (+) | 375 | WP_004582927.1 | hypothetical protein | - |
| RE428_RS15960 (RE428_32300) | - | 3566834..3566986 (+) | 153 | WP_154660779.1 | hypothetical protein | - |
| RE428_RS15965 (RE428_32310) | - | 3566979..3567596 (+) | 618 | WP_004582928.1 | hypothetical protein | - |
| RE428_RS15970 (RE428_32320) | - | 3567600..3567812 (+) | 213 | WP_004582929.1 | hypothetical protein | - |
| RE428_RS15975 (RE428_32330) | - | 3567805..3568086 (+) | 282 | WP_004582930.1 | hypothetical protein | - |
| RE428_RS15980 (RE428_32340) | - | 3568071..3568640 (+) | 570 | WP_004582931.1 | HNH endonuclease | - |
| RE428_RS15985 (RE428_32350) | - | 3568678..3568950 (+) | 273 | WP_004582932.1 | DUF3850 domain-containing protein | - |
| RE428_RS15990 (RE428_32360) | - | 3568947..3569564 (+) | 618 | WP_004582933.1 | J domain-containing protein | - |
| RE428_RS15995 (RE428_32370) | - | 3569581..3570282 (+) | 702 | WP_004582934.1 | hypothetical protein | - |
| RE428_RS16000 (RE428_32380) | - | 3570284..3570442 (+) | 159 | WP_154660780.1 | hypothetical protein | - |
| RE428_RS16005 (RE428_32390) | - | 3570435..3570740 (+) | 306 | WP_004582935.1 | hypothetical protein | - |
| RE428_RS16010 (RE428_32400) | xisR | 3570743..3570928 (+) | 186 | WP_004582936.1 | excisionase family protein | - |
| RE428_RS16015 (RE428_32410) | - | 3570901..3572163 (+) | 1263 | WP_004582937.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37471.08 Da Isoelectric Point: 5.3519
>NTDB_id=107265 RE428_RS15665 WP_004578747.1 3516886..3517932(-) (recA) [Marinobacter nanhaiticus D15-8W]
MEDNRKKALGAALSQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFVDAEHALDPVYAEKLGVDVDELLVSQPDTGEQALEIADMLVRSNAIDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVVDLGVKEGFVDKSGAWYSYNGDKIGQGKANACKFLEENPEMATEIEA
KIREKLMPKPESKDKEAKAPAEASGELL
MEDNRKKALGAALSQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFVDAEHALDPVYAEKLGVDVDELLVSQPDTGEQALEIADMLVRSNAIDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVVDLGVKEGFVDKSGAWYSYNGDKIGQGKANACKFLEENPEMATEIEA
KIREKLMPKPESKDKEAKAPAEASGELL
Nucleotide
Download Length: 1047 bp
>NTDB_id=107265 RE428_RS15665 WP_004578747.1 3516886..3517932(-) (recA) [Marinobacter nanhaiticus D15-8W]
ATGGAAGACAACCGTAAGAAGGCGTTGGGCGCGGCACTGAGCCAGATCGAGCGTCAATTCGGCAAGGGCGCCGTGATGAA
GATGGGTGATCAGCCCCGTGAAGCCATCCCGGCGGTCTCCACCGGTTCACTGGGCCTGGACGTGGCCCTGGGTATTGGCG
GCCTGCCATACGGTCGGATCGTGGAAATCTACGGACCGGAGAGTTCCGGCAAAACCACGCTGACCCTGCAGGTCATCGCC
GAAGCCCAGAAGGCCGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCACTGGATCCGGTCTACGCCGAAAAGCTGGG
CGTGGACGTGGATGAGCTGTTGGTCTCCCAGCCTGACACCGGTGAACAGGCTCTGGAAATCGCCGACATGTTGGTTCGTT
CCAATGCCATCGACGTGATCATCGTCGACTCCGTTGCGGCACTGACGCCAAAGGCGGAAATCGAAGGCGAGATGGGCGAT
TCCCATGTGGGGCTGCAGGCACGCCTGATGTCCCAGGCCCTGCGTAAGTTGACCGGTAACGTCAAGCACGCCAACTGCCT
GATGGTCTTCATCAACCAGATTCGGATGAAGATTGGCGTCATGTTCGGCAGCCCCGAAACCACGACCGGTGGTAACGCAC
TGAAGTTCTATTCCTCGGTTCGCCTGGACATCCGTCGCATCGGCGCCGTGAAGGAAGGCGATGAAGTGGTGGGTAACGAA
ACCCGGGTCAAAGTGGTCAAGAACAAGGTCTCCCCGCCGTTCAAGCAGGCTGAATTCCAGATCATGTACGGTAAGGGTAT
CTACCACATGGCGGAAGTGGTCGATCTAGGTGTGAAGGAAGGCTTCGTCGACAAGTCCGGCGCATGGTACAGCTATAACG
GCGACAAGATCGGCCAGGGCAAGGCGAATGCCTGCAAGTTCCTGGAAGAGAATCCGGAAATGGCCACGGAAATCGAAGCC
AAGATCCGCGAAAAGCTGATGCCGAAACCGGAAAGCAAGGACAAGGAAGCCAAGGCCCCGGCAGAAGCCAGTGGCGAGTT
GCTCTAA
ATGGAAGACAACCGTAAGAAGGCGTTGGGCGCGGCACTGAGCCAGATCGAGCGTCAATTCGGCAAGGGCGCCGTGATGAA
GATGGGTGATCAGCCCCGTGAAGCCATCCCGGCGGTCTCCACCGGTTCACTGGGCCTGGACGTGGCCCTGGGTATTGGCG
GCCTGCCATACGGTCGGATCGTGGAAATCTACGGACCGGAGAGTTCCGGCAAAACCACGCTGACCCTGCAGGTCATCGCC
GAAGCCCAGAAGGCCGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCACTGGATCCGGTCTACGCCGAAAAGCTGGG
CGTGGACGTGGATGAGCTGTTGGTCTCCCAGCCTGACACCGGTGAACAGGCTCTGGAAATCGCCGACATGTTGGTTCGTT
CCAATGCCATCGACGTGATCATCGTCGACTCCGTTGCGGCACTGACGCCAAAGGCGGAAATCGAAGGCGAGATGGGCGAT
TCCCATGTGGGGCTGCAGGCACGCCTGATGTCCCAGGCCCTGCGTAAGTTGACCGGTAACGTCAAGCACGCCAACTGCCT
GATGGTCTTCATCAACCAGATTCGGATGAAGATTGGCGTCATGTTCGGCAGCCCCGAAACCACGACCGGTGGTAACGCAC
TGAAGTTCTATTCCTCGGTTCGCCTGGACATCCGTCGCATCGGCGCCGTGAAGGAAGGCGATGAAGTGGTGGGTAACGAA
ACCCGGGTCAAAGTGGTCAAGAACAAGGTCTCCCCGCCGTTCAAGCAGGCTGAATTCCAGATCATGTACGGTAAGGGTAT
CTACCACATGGCGGAAGTGGTCGATCTAGGTGTGAAGGAAGGCTTCGTCGACAAGTCCGGCGCATGGTACAGCTATAACG
GCGACAAGATCGGCCAGGGCAAGGCGAATGCCTGCAAGTTCCTGGAAGAGAATCCGGAAATGGCCACGGAAATCGAAGCC
AAGATCCGCGAAAAGCTGATGCCGAAACCGGAAAGCAAGGACAAGGAAGCCAAGGCCCCGGCAGAAGCCAGTGGCGAGTT
GCTCTAA
Similar proteins
Only experimentally validated proteins are listed.