Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACIRUQ_RS03750 Genome accession   NZ_CP173382
Coordinates   826513..827610 (+) Length   365 a.a.
NCBI ID   WP_021737886.1    Uniprot ID   -
Organism   Eubacterium ramulus strain JCM 31335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 821513..832610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRUQ_RS03730 (ACIRUQ_03730) - 822031..822735 (+) 705 WP_055289753.1 SpoIIIAH-like family protein -
  ACIRUQ_RS03735 (ACIRUQ_03735) - 822903..824054 (+) 1152 WP_055289755.1 phosphopentomutase -
  ACIRUQ_RS03740 (ACIRUQ_03740) - 824286..825875 (+) 1590 WP_055289757.1 peptide chain release factor 3 -
  ACIRUQ_RS03745 (ACIRUQ_03745) trxA 825958..826269 (+) 312 WP_055289762.1 thioredoxin -
  ACIRUQ_RS03750 (ACIRUQ_03750) recA 826513..827610 (+) 1098 WP_021737886.1 recombinase RecA Machinery gene
  ACIRUQ_RS03755 (ACIRUQ_03755) - 827610..828206 (+) 597 WP_055289764.1 regulatory protein RecX -
  ACIRUQ_RS03760 (ACIRUQ_03760) rny 828402..829904 (+) 1503 WP_404856547.1 ribonuclease Y -
  ACIRUQ_RS03765 (ACIRUQ_03765) - 830027..830593 (-) 567 WP_021737883.1 biotin transporter BioY -
  ACIRUQ_RS03770 (ACIRUQ_03770) bioB 830624..831574 (-) 951 WP_055289778.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39481.01 Da        Isoelectric Point: 5.0931

>NTDB_id=1071790 ACIRUQ_RS03750 WP_021737886.1 826513..827610(+) (recA) [Eubacterium ramulus strain JCM 31335]
MAKNDKMEAQKEAKLKALDDAIAHIEKQYGKGSVMKLGDPSVHMNVETVPTGCLSLDIALGLGGVPRGRIIEVYGPESSG
KTTVALHMVAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDNLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVP
KAEIEGDMGDSHVGLQARLMSQALRKLTAVISKSNCIVIFINQLREKVGVMFGNPEVTTGGRALKFYSSIRLDVRRVEAL
KQAGEILGNHTRIKVVKNKIAPPFKEAEFDIVFGQGISREGDILDLAANTNVVNKSGAWYAYNGEKIGQGRENAKKFLKE
NPEICQEIEAKVRAYYHLDGETAETEEHAVTEPSGADDIVPMDAE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1071790 ACIRUQ_RS03750 WP_021737886.1 826513..827610(+) (recA) [Eubacterium ramulus strain JCM 31335]
ATGGCAAAAAATGATAAGATGGAAGCGCAGAAAGAAGCAAAATTAAAAGCGCTGGATGATGCGATCGCACATATTGAGAA
GCAGTACGGAAAAGGATCTGTTATGAAACTGGGAGATCCAAGTGTACATATGAACGTGGAGACGGTTCCTACCGGATGTC
TGAGTCTGGATATCGCACTGGGACTCGGTGGTGTGCCGAGAGGACGTATCATTGAGGTATACGGCCCGGAGTCCAGCGGT
AAGACAACGGTAGCCCTGCATATGGTAGCGGAAGTGCAGAAGCGTGGCGGAATCGCAGGATTTATTGATGCAGAGCATGC
ACTGGATCCGGCTTATGCAAAAAATATCGGGGTAGATATTGATAACCTGTATATTTCACAGCCGGATAACGGTGAGCAGG
CACTGGAGATCACAGAGACAATGGTTCGTTCCGGCGCGGTAGATATCGTCATCGTCGATTCCGTAGCAGCACTGGTTCCA
AAGGCAGAGATTGAGGGTGATATGGGAGATTCCCATGTGGGTCTGCAGGCACGTTTGATGTCACAGGCACTGCGTAAACT
GACCGCTGTGATCAGCAAATCCAACTGTATCGTTATCTTTATCAACCAGCTGCGAGAGAAAGTTGGTGTGATGTTTGGAA
ATCCGGAGGTAACCACCGGCGGCCGTGCATTGAAATTCTATTCTTCCATCCGTCTGGATGTACGTCGTGTGGAAGCATTG
AAACAGGCAGGAGAGATCCTTGGAAACCATACCCGTATCAAAGTAGTAAAGAATAAGATTGCGCCGCCATTCAAAGAGGC
AGAGTTTGATATTGTGTTCGGACAGGGCATTTCCAGAGAGGGTGATATCCTGGATCTGGCGGCCAATACAAACGTGGTAA
ACAAATCCGGTGCATGGTATGCATACAACGGCGAGAAAATCGGACAGGGCCGGGAAAATGCAAAGAAATTCCTGAAAGAA
AATCCGGAAATCTGTCAGGAGATTGAGGCAAAGGTACGGGCATACTATCATCTGGACGGAGAGACAGCAGAGACAGAAGA
GCATGCTGTGACAGAACCGTCGGGAGCGGATGATATTGTTCCGATGGATGCAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.659

88.493

0.616
  recA Streptococcus mitis SK321

60.165

99.726

0.6
  recA Streptococcus mitis NCTC 12261

60.165

99.726

0.6
  recA Streptococcus pneumoniae Rx1

60.894

98.082

0.597
  recA Streptococcus pneumoniae D39

60.894

98.082

0.597
  recA Streptococcus pneumoniae R6

60.894

98.082

0.597
  recA Streptococcus pneumoniae TIGR4

60.894

98.082

0.597
  recA Streptococcus mutans UA159

63.636

93.425

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

63.72

89.863

0.573
  recA Acinetobacter baylyi ADP1

61.652

92.877

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.596

88.219

0.57
  recA Vibrio cholerae strain A1552

64.596

88.219

0.57
  recA Glaesserella parasuis strain SC1401

63.497

89.315

0.567
  recA Neisseria gonorrhoeae MS11

64.486

87.945

0.567
  recA Neisseria gonorrhoeae strain FA1090

64.486

87.945

0.567
  recA Neisseria gonorrhoeae MS11

64.486

87.945

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.976

91.507

0.567
  recA Acinetobacter baumannii D1279779

60.526

93.699

0.567
  recA Streptococcus pyogenes NZ131

62.997

89.589

0.564
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.194

91.781

0.562
  recA Pseudomonas stutzeri DSM 10701

63.467

88.493

0.562
  recA Ralstonia pseudosolanacearum GMI1000

65.273

85.205

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.467

92.603

0.551
  recA Helicobacter pylori strain NCTC11637

61.61

88.493

0.545
  recA Helicobacter pylori 26695

61.3

88.493

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

87.671

0.529

Multiple sequence alignment