Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACIULN_RS04760 Genome accession   NZ_CP173172
Coordinates   1062158..1063225 (+) Length   355 a.a.
NCBI ID   WP_206084770.1    Uniprot ID   -
Organism   Providencia rettgeri strain ZAPR22R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1057158..1068225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIULN_RS04740 aroL 1057537..1058034 (+) 498 WP_206084795.1 shikimate kinase AroL -
  ACIULN_RS04745 aas 1058183..1060330 (+) 2148 WP_206084767.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  ACIULN_RS04750 lplT 1060332..1061534 (+) 1203 WP_206084768.1 lysophospholipid transporter LplT -
  ACIULN_RS04755 pncC 1061550..1062053 (+) 504 WP_206084769.1 nicotinamide-nucleotide amidase -
  ACIULN_RS04760 recA 1062158..1063225 (+) 1068 WP_206084770.1 recombinase RecA Machinery gene
  ACIULN_RS04765 alaS 1063552..1066179 (+) 2628 WP_272681962.1 alanine--tRNA ligase -
  ACIULN_RS04770 csrA 1066411..1066596 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 38187.51 Da        Isoelectric Point: 4.8129

>NTDB_id=1070413 ACIULN_RS04760 WP_206084770.1 1062158..1063225(+) (recA) [Providencia rettgeri strain ZAPR22R]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTTYLKEHPEVAQEI
DTKLREMLLNHTGEFSSAATDFISDSDEEETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1070413 ACIULN_RS04760 WP_206084770.1 1062158..1063225(+) (recA) [Providencia rettgeri strain ZAPR22R]
ATGGCTATTGATGAAAACAAACAAAAAGCACTGGCTGCGGCACTGGGTCAAATTGAAAAGCAATTTGGTAAAGGTTCCAT
TATGCGTCTTGGTGAAGACCGTTCAATGGATGTTGAAACCATTTCAACGGGTTCTTTATCTCTTGACGTTGCATTAGGTG
CTGGTGGCCTGCCATTAGGTCGTATTGTTGAAATCTACGGTCCAGAATCTTCAGGTAAAACCACCCTAACCTTACAAGTC
ATCGCTGCTGCACAACGCAGTGGTAAAACCTGTGCATTTATCGATGCCGAGCACGCACTTGACCCTATCTACGCGAAGAA
ACTCGGCGTTGATATCGATAACTTACTGTGTTCTCAGCCAGACACTGGTGAACAAGCGCTCGAAATCTGTGATGCTCTGA
CTCGGTCAGGTGCTGTTGACGTTATTATCGTTGACTCCGTTGCTGCATTAACCCCTAAAGCGGAAATAGAAGGTGAGATT
GGTGATTCTCACATGGGGCTTGCTGCACGTATGATGAGCCAAGCAATGCGTAAATTAGCAGGTAACTTAAAAACCTCAAA
TACGCTTCTGATCTTCATCAACCAAATTCGTATGAAAATTGGTGTAATGTTCGGCAACCCAGAAACAACAACGGGTGGTA
ATGCACTGAAATTCTACGCATCTGTTCGTTTAGATATCCGTCGTATTGGCGCGGTGAAAAATGGTGAAGAAATTGTCGGT
AGTGAAACTCGCGTTAAAGTGGTGAAAAATAAAGTTGCGGCGCCATTTAAACAAGCGGAATTTCAAATTCTTTACGGTGA
AGGGATTAATACCTTTGGTGAACTAATTGACCTGGGTGTTAAACACAAGCTAATTGAAAAAGCGGGTGCTTGGTATAGCT
ATAACGGCGATAAAATTGGTCAAGGTAAAGCTAACTCAACGACTTATTTAAAAGAACATCCTGAAGTTGCGCAAGAAATT
GACACAAAACTGCGAGAAATGTTACTCAATCATACAGGTGAGTTTAGCAGCGCTGCAACAGACTTTATCAGTGATTCTGA
TGAAGAAGAAACACCAGAAGAATTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.168

100

0.808

  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.168

100

0.808

  recA Pseudomonas stutzeri DSM 10701

75.535

92.113

0.696

  recA Acinetobacter baylyi ADP1

69.886

99.155

0.693

  recA Acinetobacter baumannii D1279779

70.402

98.028

0.69

  recA Glaesserella parasuis strain SC1401

68.661

98.873

0.679

  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651

  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651

  recA Neisseria gonorrhoeae strain FA1090

65.439

99.437

0.651

  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.606

0.62

  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583

  recA Latilactobacillus sakei subsp. sakei 23K

58.523

99.155

0.58

  recA Helicobacter pylori 26695

62.997

92.113

0.58

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

89.859

0.572

  recA Streptococcus pneumoniae Rx1

62.539

90.986

0.569

  recA Streptococcus pneumoniae TIGR4

62.539

90.986

0.569

  recA Streptococcus pneumoniae D39

62.539

90.986

0.569

  recA Streptococcus pneumoniae R6

62.539

90.986

0.569

  recA Streptococcus mitis SK321

62.229

90.986

0.566

  recA Streptococcus mitis NCTC 12261

61.92

90.986

0.563

  recA Streptococcus mutans UA159

61.231

91.549

0.561

  recA Streptococcus pyogenes NZ131

61.231

91.549

0.561

  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.986

0.561

  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.521

0.555

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.423

0.546


Multiple sequence alignment