Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACIHQS_RS05760 Genome accession   NZ_CP173025
Coordinates   1210872..1211918 (-) Length   348 a.a.
NCBI ID   WP_004878748.1    Uniprot ID   G7GBW2
Organism   Acinetobacter venetianus strain AVYS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1205872..1216918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS05730 (ACIHQS_05730) - 1206113..1206568 (+) 456 WP_007480233.1 phasin family protein -
  ACIHQS_RS05735 (ACIHQS_05735) - 1206737..1207009 (+) 273 WP_004878739.1 HU family DNA-binding protein -
  ACIHQS_RS05740 (ACIHQS_05740) - 1207149..1209020 (+) 1872 WP_404230993.1 SurA N-terminal domain-containing protein -
  ACIHQS_RS05745 (ACIHQS_05745) - 1209080..1209922 (-) 843 WP_404230995.1 YbgF trimerization domain-containing protein -
  ACIHQS_RS05755 (ACIHQS_05755) - 1210343..1210825 (-) 483 WP_004878746.1 regulatory protein RecX -
  ACIHQS_RS05760 (ACIHQS_05760) recA 1210872..1211918 (-) 1047 WP_004878748.1 recombinase RecA Machinery gene
  ACIHQS_RS05765 (ACIHQS_05765) - 1212079..1212507 (-) 429 WP_004878750.1 RNA-binding S4 domain-containing protein -
  ACIHQS_RS05770 (ACIHQS_05770) - 1212491..1213210 (-) 720 WP_061391662.1 HAD-IA family hydrolase -
  ACIHQS_RS05775 (ACIHQS_05775) - 1213222..1214079 (+) 858 WP_404230998.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACIHQS_RS05780 (ACIHQS_05780) - 1214133..1214864 (+) 732 WP_404231000.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38050.44 Da        Isoelectric Point: 5.0470

>NTDB_id=1069995 ACIHQS_RS05760 WP_004878748.1 1210872..1211918(-) (recA) [Acinetobacter venetianus strain AVYS1]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGRGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAQEIEK
LIREQLLTKNKPAENTDIEEEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1069995 ACIHQS_RS05760 WP_004878748.1 1210872..1211918(-) (recA) [Acinetobacter venetianus strain AVYS1]
ATGGATGATAATAAAAGCAAAGCGTTACAAGCTGCGTTAAGCCAAATTGAGAAGCAATTTGGTAAAAACACAGTGATGCG
CTTGGGCGATAACACTGTACAAGCAGTTGAAGCTGTTTCTACAGGCTCATTAACACTAGATATCGCATTAGGGATTGGCG
GATTACCTAAAGGTCGTATCATCGAAATTTACGGCCCTGAATCATCAGGTAAAACGACCATGACATTACAAGCGATTGCT
CAATGTCAGAAAAATGGCGGTACATGTGCATTTATTGATGCAGAACATGCATTAGACCCAGAATATGCACGTAAGTTAGG
TGTAGATATTGATAACCTATTGGTTTCACAACCTGACCATGGTGAACAAGCGCTCGAAATCGCAGATATGCTGGTGCGTT
CTGGCGCAATTGACCTCATCGTTGTCGACTCTGTTGCTGCATTAACCCCTAAAGCCGAAATTGAAGGCGAAATGGGTGAT
TCACACATGGGCTTACAAGCACGTTTAATGAGTCAGGCATTACGTAAAATTACAGGTAATGCAAAACGCTCTAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAGCCCAGAAACCACGACTGGTGGTAACGCAC
TTAAATTCTATGCATCTGTACGTTTAGATATCCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTACAGGTAACGAA
ACACGCGTTAAAGTTGTAAAAAACAAAATGGCGCCTCCTTTCAAAGAAGCTGTATTCCAAATCATGTACGGTAGAGGGAC
TAATCAGTTAGGTGAATTGGTTGACCTCGCAGTTCAACAAGATATCGTCCAAAAAGCTGGCGCATGGTATTCATACCAAG
GTAATAAGATTGGACAAGGTAAAAATAATGTAATTCGTCATTTTGAAGAAAACCCTCAAATGGCTCAAGAAATTGAGAAG
CTGATTCGAGAACAACTTCTGACTAAAAACAAGCCAGCCGAAAATACAGATATTGAAGAAGAAGAACCAGACTTTTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7GBW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.404

100

0.917
  recA Acinetobacter baumannii D1279779

91.908

99.425

0.914
  recA Pseudomonas stutzeri DSM 10701

72.093

98.851

0.713
  recA Vibrio cholerae strain A1552

74.006

93.966

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695
  recA Glaesserella parasuis strain SC1401

70.679

93.103

0.658
  recA Ralstonia pseudosolanacearum GMI1000

68.358

96.264

0.658
  recA Neisseria gonorrhoeae MS11

69.136

93.103

0.644
  recA Neisseria gonorrhoeae MS11

69.136

93.103

0.644
  recA Neisseria gonorrhoeae strain FA1090

69.136

93.103

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98.563

0.621
  recA Helicobacter pylori strain NCTC11637

62.319

99.138

0.618
  recA Helicobacter pylori 26695

62.029

99.138

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.977

0.612
  recA Streptococcus mutans UA159

58.621

100

0.586
  recA Streptococcus pyogenes NZ131

62.154

93.391

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.127

90.517

0.58
  recA Streptococcus pneumoniae TIGR4

61.963

93.678

0.58
  recA Streptococcus pneumoniae Rx1

61.963

93.678

0.58
  recA Streptococcus pneumoniae D39

61.963

93.678

0.58
  recA Streptococcus pneumoniae R6

61.963

93.678

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.529

0.578
  recA Streptococcus mitis NCTC 12261

61.35

93.678

0.575
  recA Streptococcus mitis SK321

61.35

93.678

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.701

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552

Multiple sequence alignment