Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACAM56_RS25445 Genome accession   NZ_AP028667
Coordinates   5351731..5352849 (-) Length   372 a.a.
NCBI ID   WP_307655869.1    Uniprot ID   -
Organism   Variovorax sp. V59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5346731..5357849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM56_RS25420 (GmRootV59_50320) - 5347226..5347912 (-) 687 WP_145739094.1 TerC family protein -
  ACAM56_RS25425 (GmRootV59_50330) sucD 5348013..5348906 (-) 894 WP_015867930.1 succinate--CoA ligase subunit alpha -
  ACAM56_RS25430 (GmRootV59_50340) sucC 5348917..5350083 (-) 1167 WP_007828709.1 ADP-forming succinate--CoA ligase subunit beta -
  ACAM56_RS25435 (GmRootV59_50350) argC 5350290..5351213 (+) 924 WP_145739092.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  ACAM56_RS25440 (GmRootV59_50360) recX 5351251..5351703 (-) 453 WP_047787445.1 recombination regulator RecX -
  ACAM56_RS25445 (GmRootV59_50370) recA 5351731..5352849 (-) 1119 WP_307655869.1 recombinase RecA Machinery gene
  ACAM56_RS25450 (GmRootV59_50380) - 5352996..5353481 (+) 486 WP_145739088.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACAM56_RS25455 (GmRootV59_50390) - 5353547..5354218 (+) 672 WP_015867936.1 response regulator transcription factor -
  ACAM56_RS25460 (GmRootV59_50400) - 5354519..5355964 (+) 1446 WP_145739086.1 sensor histidine kinase -
  ACAM56_RS25465 (GmRootV59_50410) - 5355983..5356171 (-) 189 WP_145739084.1 sporulation protein -
  ACAM56_RS25470 (GmRootV59_50420) - 5356183..5357010 (-) 828 WP_369649326.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ACAM56_RS25475 (GmRootV59_50430) - 5357013..5357669 (-) 657 WP_145739081.1 SET domain-containing protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39581.47 Da        Isoelectric Point: 5.2297

>NTDB_id=106817 ACAM56_RS25445 WP_307655869.1 5351731..5352849(-) (recA) [Variovorax sp. V59]
MDALVKGTSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKILDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADANAPAPEKAEKPAKAAKADKADKGE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=106817 ACAM56_RS25445 WP_307655869.1 5351731..5352849(-) (recA) [Variovorax sp. V59]
ATGGACGCACTCGTCAAAGGCACCAGCATCTCGGTCGCAGGCAGCGAAAAGGCCAAGGCACTGCAGGCCGCCCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAGGGTGAGGCGCTTGAAGACGTCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCGGAA
TCTTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAGATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTCATCAGCCAGCCCGACACCG
GCGAGCAGGCCCTTGAAATCGTCGATTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAATGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCTCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGACCGCCA
AGATCCTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAATCGCTGGGCATTCCGCTGCTGGCGGCCGA
TGCCAATGCGCCTGCCCCTGAAAAGGCCGAGAAGCCCGCGAAGGCGGCCAAGGCCGACAAAGCCGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.072

85.753

0.712
  recA Pseudomonas stutzeri DSM 10701

69.942

93.011

0.651
  recA Acinetobacter baylyi ADP1

70.262

92.204

0.648
  recA Neisseria gonorrhoeae MS11

71.646

88.172

0.632
  recA Neisseria gonorrhoeae MS11

71.646

88.172

0.632
  recA Neisseria gonorrhoeae strain FA1090

71.646

88.172

0.632
  recA Acinetobacter baumannii D1279779

72.136

86.828

0.626
  recA Glaesserella parasuis strain SC1401

71.296

87.097

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

87.634

0.618
  recA Vibrio cholerae strain A1552

70.552

87.634

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.405

87.634

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.282

90.591

0.591
  recA Helicobacter pylori strain NCTC11637

65.644

87.634

0.575
  recA Helicobacter pylori 26695

65.644

87.634

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.903

0.57
  recA Streptococcus mutans UA159

59.218

96.237

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

88.71

0.559
  recA Streptococcus pyogenes NZ131

62.236

88.978

0.554
  recA Streptococcus pneumoniae Rx1

61.747

89.247

0.551
  recA Streptococcus pneumoniae D39

61.747

89.247

0.551
  recA Streptococcus pneumoniae R6

61.747

89.247

0.551
  recA Streptococcus pneumoniae TIGR4

61.747

89.247

0.551
  recA Lactococcus lactis subsp. cremoris KW2

61.446

89.247

0.548
  recA Streptococcus mitis SK321

61.446

89.247

0.548
  recA Streptococcus mitis NCTC 12261

61.446

89.247

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

86.29

0.532

Multiple sequence alignment