Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACAM55_RS24960 Genome accession   NZ_AP028664
Coordinates   5285257..5286375 (+) Length   372 a.a.
NCBI ID   WP_369654094.1    Uniprot ID   -
Organism   Variovorax sp. V213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5280257..5291375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM55_RS24930 (GmRootV213_49420) - 5280730..5281347 (+) 618 WP_369654089.1 SET domain-containing protein -
  ACAM55_RS24935 (GmRootV213_49430) - 5281350..5282171 (+) 822 WP_369654090.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ACAM55_RS24940 (GmRootV213_49440) - 5282180..5282377 (+) 198 WP_369654091.1 sporulation protein -
  ACAM55_RS24945 (GmRootV213_49450) - 5282400..5283845 (-) 1446 WP_369654092.1 sensor histidine kinase N-terminal domain-containing protein -
  ACAM55_RS24950 (GmRootV213_49460) - 5283884..5284558 (-) 675 WP_093020360.1 response regulator transcription factor -
  ACAM55_RS24955 (GmRootV213_49470) - 5284625..5285110 (-) 486 WP_369654093.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACAM55_RS24960 (GmRootV213_49480) recA 5285257..5286375 (+) 1119 WP_369654094.1 recombinase RecA Machinery gene
  ACAM55_RS24965 (GmRootV213_49490) recX 5286424..5286894 (+) 471 WP_369654095.1 recombination regulator RecX -
  ACAM55_RS24970 (GmRootV213_49500) - 5286902..5287300 (+) 399 WP_369654096.1 SRPBCC family protein -
  ACAM55_RS24975 (GmRootV213_49510) - 5287429..5288157 (+) 729 WP_369654097.1 hypothetical protein -
  ACAM55_RS24980 (GmRootV213_49520) argC 5288189..5289112 (-) 924 WP_369654098.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  ACAM55_RS24985 (GmRootV213_49530) sucC 5289318..5290484 (+) 1167 WP_369654099.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39643.54 Da        Isoelectric Point: 5.2297

>NTDB_id=106781 ACAM55_RS24960 WP_369654094.1 5285257..5286375(+) (recA) [Variovorax sp. V213]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKILDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADADTPATEKAEKPAKAAKTEKADKGE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=106781 ACAM55_RS24960 WP_369654094.1 5285257..5286375(+) (recA) [Variovorax sp. V213]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAGGCCGCGTTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTCGAGGACATCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAGCATGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGACTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTCATCGACTCGGTCGCCGCC
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCTGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCAGCCCTCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTGACCGCCA
AGATCCTCGACAAGTCGGGAGCCTGGTATGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACGCCCGCGAATTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAAATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGGCGGCCGA
TGCCGATACGCCCGCGACCGAAAAAGCCGAGAAGCCCGCGAAGGCGGCCAAGACAGAGAAGGCCGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.525

91.667

0.747
  recA Pseudomonas stutzeri DSM 10701

69.914

93.817

0.656
  recA Acinetobacter baylyi ADP1

68.986

92.742

0.64
  recA Neisseria gonorrhoeae MS11

68.497

93.011

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.497

93.011

0.637
  recA Neisseria gonorrhoeae MS11

68.497

93.011

0.637
  recA Acinetobacter baumannii D1279779

70.859

87.634

0.621
  recA Glaesserella parasuis strain SC1401

71.296

87.097

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.605

88.441

0.616
  recA Vibrio cholerae strain A1552

69.605

88.441

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.477

88.441

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.163

88.978

0.589
  recA Helicobacter pylori strain NCTC11637

64.939

88.172

0.573
  recA Helicobacter pylori 26695

64.939

88.172

0.573
  recA Streptococcus mutans UA159

59.053

96.505

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

87.903

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

60.933

92.204

0.562
  recA Lactococcus lactis subsp. cremoris KW2

61.631

88.978

0.548
  recA Streptococcus pyogenes NZ131

61.702

88.441

0.546
  recA Streptococcus pneumoniae Rx1

61.027

88.978

0.543
  recA Streptococcus pneumoniae D39

61.027

88.978

0.543
  recA Streptococcus pneumoniae R6

61.027

88.978

0.543
  recA Streptococcus pneumoniae TIGR4

61.027

88.978

0.543
  recA Streptococcus mitis NCTC 12261

60.725

88.978

0.54
  recA Streptococcus mitis SK321

60.725

88.978

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

86.29

0.527

Multiple sequence alignment