Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACH6F1_RS09095 Genome accession   NZ_CP172397
Coordinates   1733198..1734229 (-) Length   343 a.a.
NCBI ID   WP_002825515.1    Uniprot ID   A0A1T1ZG11
Organism   Campylobacter coli strain YH506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728198..1739229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F1_RS09040 (ACH6F1_09025) - 1728478..1728666 (-) 189 WP_002825029.1 hypothetical protein -
  ACH6F1_RS09045 (ACH6F1_09030) proB 1728745..1729500 (-) 756 WP_002825030.1 glutamate 5-kinase -
  ACH6F1_RS09075 (ACH6F1_09060) - 1730185..1731033 (-) 849 WP_002787459.1 DNA ligase -
  ACH6F1_RS09080 (ACH6F1_09065) - 1731033..1731695 (-) 663 WP_002797086.1 AMIN domain-containing protein -
  ACH6F1_RS09085 (ACH6F1_09070) - 1731685..1731888 (-) 204 WP_002825518.1 hypothetical protein -
  ACH6F1_RS09090 (ACH6F1_09075) eno 1731954..1733198 (-) 1245 WP_002825517.1 phosphopyruvate hydratase -
  ACH6F1_RS09095 (ACH6F1_09080) recA 1733198..1734229 (-) 1032 WP_002825515.1 recombinase RecA Machinery gene
  ACH6F1_RS09100 (ACH6F1_09085) - 1734339..1735202 (+) 864 WP_002825513.1 menaquinone biosynthesis family protein -
  ACH6F1_RS09105 (ACH6F1_09090) fliQ 1735214..1735483 (+) 270 WP_002779416.1 flagellar biosynthesis protein FliQ -
  ACH6F1_RS09110 (ACH6F1_09095) - 1735480..1736256 (+) 777 WP_002779417.1 UDP-N-acetylmuramate dehydrogenase -
  ACH6F1_RS09115 (ACH6F1_09100) - 1736365..1736538 (+) 174 WP_002779418.1 hypothetical protein -
  ACH6F1_RS09120 (ACH6F1_09105) - 1736543..1737304 (-) 762 WP_002825512.1 hypothetical protein -
  ACH6F1_RS09125 (ACH6F1_09110) - 1737340..1738104 (-) 765 WP_002825511.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37105.38 Da        Isoelectric Point: 4.9075

>NTDB_id=1067323 ACH6F1_RS09095 WP_002825515.1 1733198..1734229(-) (recA) [Campylobacter coli strain YH506]
MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KEIQNSMGIEGMISGSEDEEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1067323 ACH6F1_RS09095 WP_002825515.1 1733198..1734229(-) (recA) [Campylobacter coli strain YH506]
ATGGACGATAATAAGAAAAAATCGCTTGATGCCGCCTTAAAATCGCTCGATAAAGCTTTTGGCAAGGGCACTATTTTAAG
GCTTGGAGATAAGGAAGTAGAGCAGATTGATAGCATAGGAACAGGTTCTGTAGGACTTGATCTTGCGCTTGGTATAGGCG
GAATTCCAAAAGGAAGAATTATTGAAATTTATGGGCCTGAAAGTTCAGGTAAAACAACTTTAACTTTGCATATTATAGCA
GAGTGTCAAAAAGCGGGTGGGGTTTGTGCCTTTATCGATGCTGAGCATGCTTTGGATGTAAAATATGCTAAAAATTTGGG
CGTAGATACAGATAATCTTTATATTTCTCAACCGGATTTTGGTGAGCAGGCTTTAGAGATCGTTGAAACTATAGCGCGAA
GTGGGGCTATAGATTTAATAGTTGTAGATAGCGTTGCAGCGCTTACTCCAAAGGCTGAAATTGAAGGCGATATGGGAGAT
CAACATGTAGGGCTTCAAGCAAGACTTATGTCTCAAGCATTAAGAAAGCTTACAGGAATTGTCCATAAAATGAATACAAC
CGTGATTTTTATCAACCAAATTCGTATGAAAATTGGCGCTATGGGTTATGGGACTCCTGAAACAACAACAGGAGGAAATG
CGCTCAAATTTTATGCTTCAGTGCGTTTAGATGTTAGAAAAGTAGCGACTTTAAAACAAAATGAAGAGCCTATTGGTAAC
CGTGTTAAAGTTAAAGTAGTAAAAAATAAAGTAGCACCTCCATTTAGACAAGCTGAATTTGATGTAATGTTCGGAGAAGG
TTTAAGCCGTGAGGGTGAATTGATCGATTATGGTGTAAAACTTGATATAGTAGATAAAAGTGGTGCTTGGTTTTCTTATA
AAGATAAAAAATTGGGTCAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAATCCAGAAATAGCTGATGAAATTACC
AAAGAAATTCAAAATTCTATGGGCATAGAAGGCATGATTAGCGGTAGCGAAGATGAAGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1ZG11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.376

100

0.974
  recA Helicobacter pylori 26695

77.551

100

0.776
  recA Helicobacter pylori strain NCTC11637

77.259

100

0.773
  recA Neisseria gonorrhoeae MS11

65.689

99.417

0.653
  recA Neisseria gonorrhoeae MS11

65.689

99.417

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.689

99.417

0.653
  recA Acinetobacter baylyi ADP1

63.265

100

0.633
  recA Acinetobacter baumannii D1279779

62.682

100

0.627
  recA Glaesserella parasuis strain SC1401

65.337

95.044

0.621
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

96.793

0.609
  recA Pseudomonas stutzeri DSM 10701

63.914

95.335

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.303

95.335

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.58

94.461

0.601
  recA Vibrio cholerae strain A1552

63.58

94.461

0.601
  recA Streptococcus pneumoniae D39

58.967

95.918

0.566
  recA Streptococcus pneumoniae Rx1

58.967

95.918

0.566
  recA Streptococcus pneumoniae R6

58.967

95.918

0.566
  recA Streptococcus pneumoniae TIGR4

58.967

95.918

0.566
  recA Streptococcus mitis SK321

57.059

99.125

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

56.433

99.708

0.563
  recA Streptococcus mitis NCTC 12261

58.359

95.918

0.56
  recA Streptococcus pyogenes NZ131

57.879

96.21

0.557
  recA Streptococcus mutans UA159

57.402

96.501

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

94.461

0.548
  recA Lactococcus lactis subsp. cremoris KW2

56.839

95.918

0.545

Multiple sequence alignment