Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACAM57_RS00385 Genome accession   NZ_AP028659
Coordinates   75107..76210 (+) Length   367 a.a.
NCBI ID   WP_184639288.1    Uniprot ID   -
Organism   Variovorax sp. V15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 70107..81210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM57_RS00355 (GmRootV15_00700) - 70597..71187 (+) 591 WP_369662505.1 SET domain-containing protein -
  ACAM57_RS00360 (GmRootV15_00710) - 71190..72005 (+) 816 WP_369660341.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ACAM57_RS00365 (GmRootV15_00720) - 72014..72214 (+) 201 WP_126021022.1 sporulation protein -
  ACAM57_RS00370 (GmRootV15_00730) - 72233..73675 (-) 1443 WP_126021023.1 sensor histidine kinase -
  ACAM57_RS00375 (GmRootV15_00740) - 73731..74402 (-) 672 WP_126021024.1 response regulator transcription factor -
  ACAM57_RS00380 (GmRootV15_00750) - 74475..74960 (-) 486 WP_126021025.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACAM57_RS00385 (GmRootV15_00760) recA 75107..76210 (+) 1104 WP_184639288.1 recombinase RecA Machinery gene
  ACAM57_RS00390 (GmRootV15_00770) recX 76253..76717 (+) 465 WP_126021027.1 recombination regulator RecX -
  ACAM57_RS00395 (GmRootV15_00780) - 76695..77129 (+) 435 WP_126021028.1 SRPBCC family protein -
  ACAM57_RS00400 (GmRootV15_00790) - 77163..77834 (-) 672 WP_369660342.1 RraA family protein -
  ACAM57_RS00405 (GmRootV15_00800) - 78062..78832 (+) 771 WP_369660343.1 SDR family oxidoreductase -
  ACAM57_RS00410 (GmRootV15_00810) - 78843..79709 (+) 867 WP_369660344.1 IclR family transcriptional regulator -
  ACAM57_RS00415 (GmRootV15_00820) yiaA 79716..80156 (-) 441 WP_184639296.1 inner membrane protein YiaA -
  ACAM57_RS00420 (GmRootV15_00830) - 80298..81041 (+) 744 WP_369660345.1 hypothetical protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39071.78 Da        Isoelectric Point: 5.2156

>NTDB_id=106713 ACAM57_RS00385 WP_184639288.1 75107..76210(+) (recA) [Variovorax sp. V15]
MDAAVKGSNIGANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES
SGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAAL
TPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
TIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIIDKSGAWYAYNGEKIGQGRDNAREFL
RENPSLSREIENKVRESLGVPLLAADADDVAEKPQKAAKADKAEKGE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=106713 ACAM57_RS00385 WP_184639288.1 75107..76210(+) (recA) [Variovorax sp. V15]
ATGGACGCAGCAGTCAAGGGTTCGAACATCGGCGCCAACAGCGAGAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGAT
CGAAAAGCAGTTCGGCAAGGGCACCATCATGCGGCTGGGCGAGGGCGAGGCGCTGGAGGACATCCAGGTGGTCTCTACCG
GCTCGCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCGTCGAAATCTACGGCCCTGAATCC
TCGGGCAAGACCACCCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGCCGA
ACACGCCCTCGACGTGCAATACGCCCAGAAGCTCGGCGTGAACTTGTCGGACCTGCTGATCAGCCAGCCCGACACCGGCG
AGCAGGCGCTCGAGATCGTCGATTCGCTGGTGCGCTCCGGCGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCGCTC
ACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTTCAGGCCCGCCTGATGAGCCAGGCGCTGCG
CAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGC
ACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCTCCGTTCAA
GACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCCAAGA
TCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTCCTG
CGCGAGAACCCCTCGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCGTGCCGCTGCTGGCCGCCGATGC
CGACGACGTCGCCGAGAAGCCGCAGAAGGCGGCCAAGGCCGACAAGGCAGAGAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.759

86.921

0.719
  recA Pseudomonas stutzeri DSM 10701

70.882

92.643

0.657
  recA Neisseria gonorrhoeae MS11

71.818

89.918

0.646
  recA Neisseria gonorrhoeae strain FA1090

71.818

89.918

0.646
  recA Neisseria gonorrhoeae MS11

71.818

89.918

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.406

94.005

0.643
  recA Vibrio cholerae strain A1552

68.406

94.005

0.643
  recA Acinetobacter baylyi ADP1

72.086

88.828

0.64
  recA Glaesserella parasuis strain SC1401

71.914

88.283

0.635
  recA Acinetobacter baumannii D1279779

70.859

88.828

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.015

93.46

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.767

90.191

0.602
  recA Helicobacter pylori 26695

64.939

89.373

0.58
  recA Helicobacter pylori strain NCTC11637

64.939

89.373

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.101

0.575
  recA Streptococcus mitis NCTC 12261

58.924

96.185

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

62.918

89.646

0.564
  recA Lactococcus lactis subsp. cremoris KW2

61.934

90.191

0.559
  recA Streptococcus pneumoniae D39

59.593

93.733

0.559
  recA Streptococcus pneumoniae TIGR4

59.593

93.733

0.559
  recA Streptococcus pneumoniae R6

59.593

93.733

0.559
  recA Streptococcus pneumoniae Rx1

59.593

93.733

0.559
  recA Streptococcus mutans UA159

62.121

89.918

0.559
  recA Streptococcus pyogenes NZ131

62.006

89.646

0.556
  recA Streptococcus mitis SK321

60.725

90.191

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

87.466

0.537

Multiple sequence alignment