Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACH3PB_RS00860 Genome accession   NZ_CP172312
Coordinates   191536..192573 (+) Length   345 a.a.
NCBI ID   WP_416397581.1    Uniprot ID   -
Organism   Allohahella sp. A8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 186536..197573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH3PB_RS00845 (ACH3PB_00845) fdxA 187492..187815 (-) 324 WP_416397578.1 ferredoxin FdxA -
  ACH3PB_RS00850 (ACH3PB_00850) mutS 187865..190669 (-) 2805 WP_416397579.1 DNA mismatch repair protein MutS -
  ACH3PB_RS00855 (ACH3PB_00855) - 190777..191304 (+) 528 WP_416397580.1 CinA family protein -
  ACH3PB_RS00860 (ACH3PB_00860) recA 191536..192573 (+) 1038 WP_416397581.1 recombinase RecA Machinery gene
  ACH3PB_RS00865 (ACH3PB_00865) - 192585..193061 (+) 477 WP_416397582.1 molybdenum cofactor biosynthesis protein MoaE -
  ACH3PB_RS00870 (ACH3PB_00870) - 193081..193503 (-) 423 WP_416397583.1 hypothetical protein -
  ACH3PB_RS00875 (ACH3PB_00875) - 193604..193897 (-) 294 WP_416397584.1 hypothetical protein -
  ACH3PB_RS00880 (ACH3PB_00880) - 194109..196493 (+) 2385 WP_416397585.1 Lon protease family protein -
  ACH3PB_RS00885 (ACH3PB_00885) - 196460..197125 (-) 666 WP_416397586.1 alpha-ketoglutarate-dependent dioxygenase AlkB family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37070.67 Da        Isoelectric Point: 5.9895

>NTDB_id=1066240 ACH3PB_RS00860 WP_416397581.1 191536..192573(+) (recA) [Allohahella sp. A8]
MDDNRKKALTAALSQIERQYGKGAVMRMGEKPREAMPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFIDAEHALDPVYAEKLGVNIDDLLVSQPDTGEQALEIADMLVRSGAVDVIVIDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKQANVLMVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVSPPFRQTEFQILYGRGIYRTGEVVDLGVKEGLVDKAGAWYSYNGDKIGQGKANAAKFLEENPEMLAEIEG
KIRDKLLPKPTGPKAVPEAEAEAAV

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1066240 ACH3PB_RS00860 WP_416397581.1 191536..192573(+) (recA) [Allohahella sp. A8]
ATGGATGATAATCGCAAGAAGGCGCTTACCGCAGCGCTGAGTCAGATCGAACGACAGTATGGTAAAGGCGCGGTCATGCG
CATGGGTGAAAAGCCCAGGGAGGCTATGCCTTCAGTCTCTACCGGCTCTCTCGGACTCGATATTGCACTCGGTATAGGCG
GGCTGCCTTATGGACGTATAGTCGAAATCTACGGTCCGGAAAGTTCCGGTAAGACGACGCTAACGCTCCAGGTGATTGCG
GAGGCGCAGAAAAAAGGGAAGACCTGCGCCTTTATCGATGCCGAACACGCGCTCGACCCGGTGTATGCGGAGAAGCTTGG
CGTTAATATTGATGATCTGCTGGTCTCGCAGCCGGATACCGGCGAGCAAGCACTTGAGATCGCCGATATGCTGGTGCGAT
CTGGTGCGGTCGACGTCATCGTCATCGACTCCGTCGCAGCACTCACTCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
TCACACGTGGGCCTGCAAGCTCGACTGATGTCTCAGGCACTCAGAAAGCTGACCGGTAACGTCAAGCAGGCCAATGTTCT
GATGGTATTCATCAACCAGATCAGAATGAAGATTGGTGTCATGTTCGGTTCGCCTGAAACCACTACCGGTGGTAACGCCT
TGAAGTTTTATGCCTCAGTTCGACTGGATATTCGTCGCATCGGTGCAGTGAAGGAAGGCGACGAGGTTGTCGGTAATGAA
ACCCGTGTGAAGGTTGTCAAGAACAAGGTCAGTCCGCCGTTCCGTCAGACTGAGTTCCAGATTCTCTACGGTCGTGGCAT
CTATCGCACAGGTGAGGTAGTAGACCTTGGTGTGAAGGAAGGCTTGGTCGACAAAGCTGGTGCTTGGTATAGCTATAACG
GTGACAAGATTGGTCAGGGCAAGGCCAATGCGGCCAAGTTCCTTGAGGAAAACCCTGAAATGCTGGCCGAAATCGAAGGC
AAGATTCGGGACAAGCTCCTCCCCAAGCCTACAGGTCCAAAAGCAGTGCCTGAAGCCGAAGCCGAAGCCGCTGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.882

98.551

0.797
  recA Acinetobacter baylyi ADP1

73.684

99.13

0.73
  recA Acinetobacter baumannii D1279779

72.807

99.13

0.722
  recA Vibrio cholerae strain A1552

72.012

99.42

0.716
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.012

99.42

0.716
  recA Ralstonia pseudosolanacearum GMI1000

69.741

100

0.701
  recA Glaesserella parasuis strain SC1401

71.429

95.362

0.681
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.913

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

94.783

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.128

97.681

0.597
  recA Helicobacter pylori strain NCTC11637

60.588

98.551

0.597
  recA Helicobacter pylori 26695

60.588

98.551

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

93.043

0.588
  recA Streptococcus mutans UA159

61.538

94.203

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

93.043

0.574
  recA Streptococcus pyogenes NZ131

59.756

95.072

0.568
  recA Streptococcus pneumoniae D39

59.509

94.493

0.562
  recA Streptococcus pneumoniae TIGR4

59.509

94.493

0.562
  recA Streptococcus pneumoniae Rx1

59.509

94.493

0.562
  recA Streptococcus pneumoniae R6

59.509

94.493

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

93.913

0.559
  recA Streptococcus mitis SK321

59.752

93.623

0.559
  recA Streptococcus mitis NCTC 12261

59.443

93.623

0.557
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.623

0.551

Multiple sequence alignment