Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACHZ97_RS06695 Genome accession   NZ_CP172310
Coordinates   1432092..1433126 (+) Length   344 a.a.
NCBI ID   WP_396617086.1    Uniprot ID   -
Organism   Lysobacter soli strain P18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427092..1438126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZ97_RS06680 (ACHZ97_06680) mutS 1427904..1430480 (-) 2577 WP_396617084.1 DNA mismatch repair protein MutS -
  ACHZ97_RS06685 (ACHZ97_06685) - 1430625..1431125 (+) 501 WP_115840758.1 CinA family protein -
  ACHZ97_RS06690 (ACHZ97_06690) lexA 1431194..1431850 (+) 657 WP_396617085.1 transcriptional repressor LexA -
  ACHZ97_RS06695 (ACHZ97_06695) recA 1432092..1433126 (+) 1035 WP_396617086.1 recombinase RecA Machinery gene
  ACHZ97_RS06700 (ACHZ97_06700) recX 1433165..1433671 (+) 507 WP_396617087.1 recombination regulator RecX -
  ACHZ97_RS06705 (ACHZ97_06705) alaS 1433998..1436631 (+) 2634 WP_396617088.1 alanine--tRNA ligase -
  ACHZ97_RS06710 (ACHZ97_06710) csrA 1436768..1436974 (+) 207 WP_115840753.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37232.69 Da        Isoelectric Point: 5.0733

>NTDB_id=1066218 ACHZ97_RS06695 WP_396617086.1 1432092..1433126(+) (recA) [Lysobacter soli strain P18]
MDDNKKRALSAALGQIEKQFGKGSVMRMGDRTIEATEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKAGGTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGSIKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSAYDERIGQGKENARQYLKENPHVAERL
ETALREKFVPAEANRSEEDEGQDD

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1066218 ACHZ97_RS06695 WP_396617086.1 1432092..1433126(+) (recA) [Lysobacter soli strain P18]
ATGGACGACAACAAGAAGCGCGCGCTCTCAGCCGCACTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGATCGCACGATCGAAGCGACGGAAGTCATCGGTACCGGCTCGCTGATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTCGTGGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACGCTCACGCTACAGGCCATCGCC
CAGTGCCAGAAGGCCGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTACGCCGCCAAGCTCGG
CGTCAACGTCGACGACCTGCTGGTCAGCCAGCCGGACACGGGCGAGCAGGCGCTGGAAATCGCCGACATGCTCGTGCGCT
CGGCGGCGGTCGACATGGTCGTGGTCGACTCCGTCGCCGCACTGACGCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGTCTGCAAGCGCGACTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACTGCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGTTCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTCGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCGTCACCGAAATCCTCTATGGCGA
AGGCATCTCGCGCGAAGGCGAGCTGATCGACATGGGCGTGGAGGCAAAGCTGGTCGAGAAGTCCGGCGCCTGGTACAGCG
CGTACGACGAGCGCATCGGACAGGGCAAGGAAAACGCCCGCCAGTACCTGAAGGAAAATCCGCATGTCGCCGAGCGCCTG
GAAACGGCCCTGCGCGAGAAGTTCGTGCCGGCCGAGGCCAACCGCAGCGAGGAAGACGAGGGTCAGGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

73.653

97.093

0.715
  recA Ralstonia pseudosolanacearum GMI1000

72.404

97.965

0.709
  recA Acinetobacter baumannii D1279779

70.231

100

0.706
  recA Acinetobacter baylyi ADP1

71.726

97.674

0.701
  recA Vibrio cholerae strain A1552

71.988

96.512

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.988

96.512

0.695
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae strain FA1090

69.632

94.767

0.66
  recA Glaesserella parasuis strain SC1401

69.04

93.895

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.663

100

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

96.802

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

59.942

99.419

0.596
  recA Helicobacter pylori 26695

62.883

94.767

0.596
  recA Helicobacter pylori strain NCTC11637

62.195

95.349

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Streptococcus mitis SK321

58.892

99.709

0.587
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus mutans UA159

58.529

98.837

0.578
  recA Streptococcus pyogenes NZ131

59.394

95.93

0.57
  recA Streptococcus mitis NCTC 12261

59.756

95.349

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.841

95.349

0.561

Multiple sequence alignment