Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF0KO_RS06740 Genome accession   NZ_CP172307
Coordinates   1466420..1467472 (+) Length   350 a.a.
NCBI ID   WP_064030604.1    Uniprot ID   A0A1S1XXY3
Organism   Methylomonas sp. 2B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1461420..1472472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0KO_RS06720 (ACF0KO_06720) - 1461857..1462576 (+) 720 WP_064030601.1 DUF2490 domain-containing protein -
  ACF0KO_RS06725 (ACF0KO_06725) - 1462830..1464197 (+) 1368 WP_064030602.1 hypothetical protein -
  ACF0KO_RS06730 (ACF0KO_06730) - 1464312..1465034 (+) 723 WP_064030603.1 hypothetical protein -
  ACF0KO_RS06735 (ACF0KO_06735) - 1465038..1466336 (+) 1299 WP_231883715.1 cobyrinate a,c-diamide synthase -
  ACF0KO_RS06740 (ACF0KO_06740) recA 1466420..1467472 (+) 1053 WP_064030604.1 recombinase RecA Machinery gene
  ACF0KO_RS06745 (ACF0KO_06745) - 1467658..1468140 (+) 483 WP_082885623.1 GIY-YIG nuclease family protein -
  ACF0KO_RS06750 (ACF0KO_06750) - 1468650..1469399 (+) 750 WP_071159566.1 IS5 family transposase -
  ACF0KO_RS06755 (ACF0KO_06755) - 1469721..1470890 (+) 1170 WP_082885373.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  ACF0KO_RS06760 (ACF0KO_06760) - 1470964..1471452 (-) 489 WP_064025785.1 hypothetical protein -
  ACF0KO_RS06765 (ACF0KO_06765) - 1471588..1472076 (+) 489 WP_064025787.1 regulatory protein RecX -
  ACF0KO_RS06770 (ACF0KO_06770) - 1472167..1472385 (+) 219 WP_064025789.1 addiction module protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37782.08 Da        Isoelectric Point: 4.9474

>NTDB_id=1066196 ACF0KO_RS06740 WP_064030604.1 1466420..1467472(+) (recA) [Methylomonas sp. 2B]
MDENKKKALGAALIQIEKQFGKGSVMRMGDVAATRDIEVVSTGSLSVDIALGCGGLPRGRIIEIYGPESSGKTTLTLQTI
AQVQKLGGTAAFVDAEHALDPVYAQKIGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDIVVIDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIGAIKKGDEVIGN
ETRVKIVKNKVAPPFKQADFEILYGEGVSFFGELVDLGVEFGFVQKSGSWYSYNNDKIGQGKDNAKQFLREHPEAAAELE
KAIREKAFVSRVTNAPAPADDEDAEFNDAD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1066196 ACF0KO_RS06740 WP_064030604.1 1466420..1467472(+) (recA) [Methylomonas sp. 2B]
ATGGACGAAAACAAAAAAAAGGCGCTGGGCGCGGCGCTGATCCAAATCGAAAAACAATTCGGCAAAGGCTCGGTGATGCG
GATGGGCGACGTTGCCGCGACCCGCGACATCGAAGTCGTTTCGACCGGCTCGTTGTCGGTCGATATCGCGCTGGGCTGCG
GCGGTCTGCCGCGCGGCCGGATCATCGAAATCTACGGCCCGGAATCGTCCGGTAAAACCACGCTGACCTTGCAAACCATC
GCGCAAGTGCAAAAACTGGGCGGCACCGCCGCCTTCGTCGATGCCGAGCACGCGTTGGACCCGGTTTACGCCCAGAAAAT
CGGCGTCAACATCGACGACCTTTTGGTGTCCCAGCCAGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTCC
GTTCCGGCGCGGTCGATATCGTGGTTATCGACTCGGTGGCGGCGTTAACCCCGAAAGCCGAAATCGAAGGCGACATGGGC
GACTCGCACATGGGCCTGCAAGCGCGGCTGATGTCGCAAGCCTTGCGCAAACTCACCGCCAACATCAAACGCTCCAATAC
GCTGGTGATCTTCATCAACCAGCTGCGGATGAAAATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACG
CGCTGAAATTCTACGCCTCGGTGCGGATGGACATTCGCCGCATCGGCGCGATCAAGAAGGGCGACGAAGTGATCGGCAAC
GAAACCCGCGTCAAGATCGTCAAAAACAAAGTCGCGCCGCCGTTCAAGCAAGCCGACTTCGAAATTCTGTACGGCGAAGG
CGTGTCCTTCTTCGGCGAATTGGTGGATTTGGGCGTCGAATTCGGCTTCGTCCAAAAATCCGGCTCCTGGTACAGCTACA
ACAACGACAAAATCGGCCAAGGCAAGGACAACGCCAAGCAATTCCTGCGCGAACACCCGGAGGCCGCCGCCGAATTGGAA
AAAGCCATCCGCGAAAAAGCCTTCGTCAGCCGCGTGACCAACGCCCCAGCGCCGGCCGACGACGAAGACGCCGAGTTCAA
CGACGCCGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S1XXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.571

100

0.706
  recA Acinetobacter baylyi ADP1

70.145

98.571

0.691
  recA Acinetobacter baumannii D1279779

69.942

98.857

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.846

92.857

0.686
  recA Vibrio cholerae strain A1552

73.846

92.857

0.686
  recA Glaesserella parasuis strain SC1401

72.36

92

0.666
  recA Ralstonia pseudosolanacearum GMI1000

73.651

90

0.663
  recA Neisseria gonorrhoeae MS11

70.37

92.571

0.651
  recA Neisseria gonorrhoeae MS11

70.37

92.571

0.651
  recA Neisseria gonorrhoeae strain FA1090

70.37

92.571

0.651
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.061

94.286

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

92

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

92.857

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

60

98.571

0.591
  recA Streptococcus pneumoniae TIGR4

62.883

93.143

0.586
  recA Streptococcus pneumoniae Rx1

62.883

93.143

0.586
  recA Streptococcus pneumoniae D39

62.883

93.143

0.586
  recA Streptococcus pneumoniae R6

62.883

93.143

0.586
  recA Streptococcus mutans UA159

62.27

93.143

0.58
  recA Streptococcus pyogenes NZ131

61.89

93.714

0.58
  recA Streptococcus mitis SK321

62.037

92.571

0.574
  recA Helicobacter pylori strain NCTC11637

61.656

93.143

0.574
  recA Helicobacter pylori 26695

61.35

93.143

0.571
  recA Streptococcus mitis NCTC 12261

61.728

92.571

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.182

94

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60.494

92.571

0.56

Multiple sequence alignment