Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AABJ45_RS09840 Genome accession   NZ_AP028611
Coordinates   1922255..1923421 (-) Length   388 a.a.
NCBI ID   WP_001085467.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1916374..1938567 1922255..1923421 within 0


Gene organization within MGE regions


Location: 1916374..1938567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS09805 (TKY121527_19380) - 1916374..1917168 (-) 795 WP_001101210.1 hypothetical protein -
  AABJ45_RS09810 (TKY121527_19390) - 1917576..1918001 (-) 426 WP_000204063.1 hypothetical protein -
  AABJ45_RS09815 (TKY121527_19400) - 1918130..1918489 (-) 360 WP_000749819.1 hypothetical protein -
  AABJ45_RS09820 (TKY121527_19410) - 1918535..1918741 (-) 207 WP_000366093.1 hypothetical protein -
  AABJ45_RS09825 (TKY121527_19420) - 1918728..1918889 (-) 162 WP_000289348.1 helix-turn-helix transcriptional regulator -
  AABJ45_RS09830 (TKY121527_19430) lytA 1919247..1920203 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  AABJ45_RS09835 (TKY121527_19440) - 1920579..1921949 (-) 1371 WP_001036271.1 MATE family efflux transporter -
  AABJ45_RS09840 (TKY121527_19450) recA 1922255..1923421 (-) 1167 WP_001085467.1 recombinase RecA Machinery gene
  AABJ45_RS09845 (TKY121527_19460) cinA 1923476..1924732 (-) 1257 WP_000642718.1 competence/damage-inducible protein A Machinery gene
  AABJ45_RS09850 (TKY121527_19470) - 1924817..1925833 (-) 1017 WP_000239283.1 LCP family protein -
  AABJ45_RS09855 (TKY121527_19480) - 1925841..1926359 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  AABJ45_RS09860 (TKY121527_19490) tsaE 1926349..1926792 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  AABJ45_RS09865 (TKY121527_19500) comM 1926878..1927498 (-) 621 WP_000839908.1 hypothetical protein Regulator
  AABJ45_RS09870 (TKY121527_19510) - 1927881..1928744 (-) 864 WP_001093641.1 helix-turn-helix transcriptional regulator -
  AABJ45_RS09875 (TKY121527_19520) - 1928937..1929107 (+) 171 WP_001227862.1 PhrA family quorum-sensing system peptide -
  AABJ45_RS09880 (TKY121527_19530) pneA1 1929210..1929434 (+) 225 WP_000181087.1 two-peptide bacteriocin subunit PneA1 -
  AABJ45_RS09885 (TKY121527_19540) pneA2 1929441..1929629 (+) 189 WP_000786759.1 two-peptide bacteriocin subunit PneA2 -
  AABJ45_RS09890 (TKY121527_19550) lanM 1929745..1932735 (+) 2991 WP_000875573.1 type 2 lanthipeptide synthetase LanM -
  AABJ45_RS09895 (TKY121527_19560) - 1933085..1933789 (+) 705 WP_001033170.1 flavodoxin family protein -
  AABJ45_RS09900 (TKY121527_19570) - 1933770..1934699 (+) 930 WP_000912954.1 M50 family metallopeptidase -
  AABJ45_RS09905 (TKY121527_19580) - 1934696..1936804 (+) 2109 WP_000701298.1 peptidase domain-containing ABC transporter -
  AABJ45_RS09910 (TKY121527_19590) - 1936828..1938567 (+) 1740 WP_000699969.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41965.78 Da        Isoelectric Point: 4.8403

>NTDB_id=106609 AABJ45_RS09840 WP_001085467.1 1922255..1923421(-) (recA) [Streptococcus pneumoniae strain Sep6]
MAKKPKKLEEISKKFGSEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=106609 AABJ45_RS09840 WP_001085467.1 1922255..1923421(-) (recA) [Streptococcus pneumoniae strain Sep6]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGTCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGACCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

99.742

100

0.997
  recA Streptococcus pneumoniae D39

99.742

100

0.997
  recA Streptococcus pneumoniae R6

99.742

100

0.997
  recA Streptococcus pneumoniae TIGR4

99.742

100

0.997
  recA Streptococcus mitis NCTC 12261

93.814

100

0.938
  recA Streptococcus mitis SK321

93.299

100

0.933
  recA Streptococcus mutans UA159

83.204

99.742

0.83
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.125

90.722

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

89.175

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

69.091

85.052

0.588
  recA Glaesserella parasuis strain SC1401

57.641

96.134

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Neisseria gonorrhoeae strain FA1090

60.177

87.371

0.526
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Helicobacter pylori 26695

56.125

90.464

0.508
  recA Helicobacter pylori strain NCTC11637

56.125

90.464

0.508
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment