Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACGYMG_RS02760 | Genome accession | NZ_CP172239 |
| Coordinates | 602051..603097 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain 7cd | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 567169..638342 | 602051..603097 | within | 0 |
Gene organization within MGE regions
Location: 567169..638342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACGYMG_RS02600 (ACGYMG_02600) | - | 567936..568496 (+) | 561 | WP_231302879.1 | DUF2953 domain-containing protein | - |
| ACGYMG_RS02605 (ACGYMG_02605) | ytfJ | 568450..568878 (+) | 429 | WP_003419458.1 | GerW family sporulation protein | - |
| ACGYMG_RS02610 (ACGYMG_02610) | - | 569126..569566 (+) | 441 | WP_003419459.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| ACGYMG_RS02615 (ACGYMG_02615) | - | 569582..571033 (+) | 1452 | WP_070117383.1 | leucyl aminopeptidase | - |
| ACGYMG_RS02620 (ACGYMG_02620) | - | 571124..571792 (-) | 669 | WP_044298968.1 | YwaF family protein | - |
| ACGYMG_RS02625 (ACGYMG_02625) | - | 572061..572201 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| ACGYMG_RS02630 (ACGYMG_02630) | - | 572376..572696 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| ACGYMG_RS02635 (ACGYMG_02635) | - | 572816..573553 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| ACGYMG_RS02640 (ACGYMG_02640) | acd | 573768..575591 (+) | 1824 | WP_070117384.1 | N-acetylglucosaminidase | - |
| ACGYMG_RS02645 (ACGYMG_02645) | - | 575796..580094 (+) | 4299 | WP_003428241.1 | PolC-type DNA polymerase III | - |
| ACGYMG_RS02650 (ACGYMG_02650) | rimP | 580298..580759 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| ACGYMG_RS02655 (ACGYMG_02655) | nusA | 580789..581943 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| ACGYMG_RS02660 (ACGYMG_02660) | rnpM | 581950..582231 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| ACGYMG_RS02665 (ACGYMG_02665) | - | 582221..582532 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| ACGYMG_RS02670 (ACGYMG_02670) | infB | 582554..584494 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| ACGYMG_RS02675 (ACGYMG_02675) | rbfA | 584537..584917 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| ACGYMG_RS02680 (ACGYMG_02680) | - | 584898..585881 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| ACGYMG_RS02685 (ACGYMG_02685) | truB | 585894..586799 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| ACGYMG_RS02690 (ACGYMG_02690) | - | 586930..587859 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ACGYMG_RS02695 (ACGYMG_02695) | rpsO | 587963..588220 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| ACGYMG_RS02700 (ACGYMG_02700) | - | 588460..589305 (+) | 846 | WP_022616925.1 | DegV family protein | - |
| ACGYMG_RS02705 (ACGYMG_02705) | pnp | 589430..591541 (+) | 2112 | WP_022616926.1 | polyribonucleotide nucleotidyltransferase | - |
| ACGYMG_RS02710 (ACGYMG_02710) | - | 591807..592550 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| ACGYMG_RS02715 (ACGYMG_02715) | - | 592708..593955 (+) | 1248 | WP_022616927.1 | M16 family metallopeptidase | - |
| ACGYMG_RS02720 (ACGYMG_02720) | - | 593990..594235 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| ACGYMG_RS02725 (ACGYMG_02725) | dapG | 594245..595468 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| ACGYMG_RS02730 (ACGYMG_02730) | - | 595581..595793 (+) | 213 | WP_395760295.1 | hypothetical protein | - |
| ACGYMG_RS02735 (ACGYMG_02735) | - | 595799..596314 (+) | 516 | WP_330594491.1 | ClpP family protease | - |
| ACGYMG_RS02740 (ACGYMG_02740) | - | 596437..598845 (+) | 2409 | WP_070117387.1 | FtsK/SpoIIIE family DNA translocase | - |
| ACGYMG_RS02745 (ACGYMG_02745) | mnmH | 598848..599906 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| ACGYMG_RS02750 (ACGYMG_02750) | rimO | 599900..601234 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| ACGYMG_RS02755 (ACGYMG_02755) | pgsA | 601221..601763 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ACGYMG_RS02760 (ACGYMG_02760) | recA | 602051..603097 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| ACGYMG_RS02765 (ACGYMG_02765) | rny | 603273..604814 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| ACGYMG_RS02770 (ACGYMG_02770) | - | 605449..607230 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| ACGYMG_RS02775 (ACGYMG_02775) | lepB | 607312..607842 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| ACGYMG_RS02780 (ACGYMG_02780) | - | 607882..608706 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| ACGYMG_RS02785 (ACGYMG_02785) | - | 608963..609871 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| ACGYMG_RS02790 (ACGYMG_02790) | purB | 610015..611460 (+) | 1446 | WP_070117388.1 | adenylosuccinate lyase | - |
| ACGYMG_RS02795 (ACGYMG_02795) | - | 611771..612223 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| ACGYMG_RS02800 (ACGYMG_02800) | - | 612627..614204 (+) | 1578 | WP_074048084.1 | PTS transporter subunit EIIC | - |
| ACGYMG_RS02805 (ACGYMG_02805) | - | 614352..615104 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| ACGYMG_RS02810 (ACGYMG_02810) | - | 615237..616604 (+) | 1368 | WP_330388089.1 | 6-phospho-alpha-glucosidase | - |
| ACGYMG_RS02815 (ACGYMG_02815) | - | 616695..617891 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ACGYMG_RS02820 (ACGYMG_02820) | - | 618276..618509 (+) | 234 | WP_395760296.1 | hypothetical protein | - |
| ACGYMG_RS02825 (ACGYMG_02825) | galT | 618473..619225 (+) | 753 | WP_395760297.1 | galactose-1-phosphate uridylyltransferase | - |
| ACGYMG_RS02830 (ACGYMG_02830) | - | 619378..620130 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| ACGYMG_RS02835 (ACGYMG_02835) | - | 620222..620998 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| ACGYMG_RS02840 (ACGYMG_02840) | - | 621313..623211 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| ACGYMG_RS02845 (ACGYMG_02845) | - | 623339..624460 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| ACGYMG_RS02850 (ACGYMG_02850) | - | 624659..624991 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| ACGYMG_RS02855 (ACGYMG_02855) | - | 624978..626036 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| ACGYMG_RS02860 (ACGYMG_02860) | - | 626029..627099 (+) | 1071 | WP_070117391.1 | DUF4097 family beta strand repeat-containing protein | - |
| ACGYMG_RS02865 (ACGYMG_02865) | - | 627201..627737 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| ACGYMG_RS02870 (ACGYMG_02870) | - | 627853..628560 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| ACGYMG_RS02875 (ACGYMG_02875) | - | 628562..629278 (+) | 717 | WP_022616933.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| ACGYMG_RS02880 (ACGYMG_02880) | - | 629280..630038 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| ACGYMG_RS02885 (ACGYMG_02885) | - | 630173..631561 (+) | 1389 | WP_022616934.1 | two-component system sensor histidine kinase | - |
| ACGYMG_RS02890 (ACGYMG_02890) | - | 631637..632458 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| ACGYMG_RS02895 (ACGYMG_02895) | - | 632694..633862 (+) | 1169 | Protein_571 | amidase domain-containing protein | - |
| ACGYMG_RS02900 (ACGYMG_02900) | - | 634045..634245 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| ACGYMG_RS02905 (ACGYMG_02905) | - | 634666..635094 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| ACGYMG_RS02910 (ACGYMG_02910) | - | 635237..635992 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| ACGYMG_RS02915 (ACGYMG_02915) | - | 636693..637199 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACGYMG_RS02920 (ACGYMG_02920) | - | 637281..637601 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| ACGYMG_RS02925 (ACGYMG_02925) | - | 637770..637967 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=1065857 ACGYMG_RS02760 WP_003428218.1 602051..603097(+) (recA) [Clostridioides difficile strain 7cd]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=1065857 ACGYMG_RS02760 WP_003428218.1 602051..603097(+) (recA) [Clostridioides difficile strain 7cd]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.