Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACHMXE_RS12380 Genome accession   NZ_CP172004
Coordinates   42312..43373 (+) Length   353 a.a.
NCBI ID   WP_209540138.1    Uniprot ID   -
Organism   Variovorax sp. UC122_21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37312..48373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXE_RS12350 (ACHMXE_12365) - 37710..38402 (+) 693 WP_203203398.1 SET domain-containing protein -
  ACHMXE_RS12355 (ACHMXE_12370) - 38405..39230 (+) 826 Protein_38 biotin--[acetyl-CoA-carboxylase] ligase -
  ACHMXE_RS12360 (ACHMXE_12375) - 39245..39454 (+) 210 WP_395349618.1 sporulation protein -
  ACHMXE_RS12365 (ACHMXE_12380) - 39464..40903 (-) 1440 WP_203203395.1 sensor histidine kinase -
  ACHMXE_RS12370 (ACHMXE_12385) - 40941..41612 (-) 672 WP_203203394.1 response regulator transcription factor -
  ACHMXE_RS12375 (ACHMXE_12390) - 41680..42165 (-) 486 WP_057593706.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHMXE_RS12380 (ACHMXE_12395) recA 42312..43373 (+) 1062 WP_209540138.1 recombinase RecA Machinery gene
  ACHMXE_RS12385 (ACHMXE_12400) recX 43441..43896 (+) 456 WP_395349619.1 recombination regulator RecX -
  ACHMXE_RS12390 (ACHMXE_12405) - 43883..44311 (+) 429 WP_395349620.1 SRPBCC family protein -
  ACHMXE_RS12395 (ACHMXE_12410) - 44385..45128 (+) 744 WP_203203391.1 hypothetical protein -
  ACHMXE_RS12400 (ACHMXE_12415) argC 45181..46105 (-) 925 Protein_47 N-acetyl-gamma-glutamyl-phosphate reductase -
  ACHMXE_RS12405 (ACHMXE_12420) sucC 46313..47479 (+) 1167 WP_203203389.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37520.10 Da        Isoelectric Point: 5.0512

>NTDB_id=1064764 ACHMXE_RS12380 WP_209540138.1 42312..43373(+) (recA) [Variovorax sp. UC122_21]
MDAVVKGSSIAGANTEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE
SSGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIIDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADATGAAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1064764 ACHMXE_RS12380 WP_209540138.1 42312..43373(+) (recA) [Variovorax sp. UC122_21]
ATGGACGCAGTCGTCAAGGGCTCGAGCATCGCAGGCGCCAACACCGAAAAGGCCAAGGCCCTCCAGGCCGCGCTGGCCCA
GATCGAGAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTCGAGGACATCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTCGACATCGCACTGGGCGTCGGCGGTCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGTCCCGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAACACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAGATCGTCGACTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGACCGCCA
AGATCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCGCGCGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAAATCGAGAACAAGGTGCGCGAATCGCTGGGCATCCCGCTGCTGGCGGCGGA
CGCGACCGGCGCGGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.176

96.317

0.782
  recA Pseudomonas stutzeri DSM 10701

70.882

96.317

0.683
  recA Acinetobacter baylyi ADP1

70.92

95.467

0.677
  recA Neisseria gonorrhoeae MS11

71.257

94.618

0.674
  recA Neisseria gonorrhoeae MS11

71.257

94.618

0.674
  recA Neisseria gonorrhoeae strain FA1090

71.257

94.618

0.674
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.118

96.317

0.666
  recA Vibrio cholerae strain A1552

69.118

96.317

0.666
  recA Glaesserella parasuis strain SC1401

72.222

91.785

0.663
  recA Acinetobacter baumannii D1279779

71.517

91.501

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.477

93.201

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

93.768

0.629
  recA Helicobacter pylori 26695

64.939

92.918

0.603
  recA Helicobacter pylori strain NCTC11637

64.939

92.918

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

92.635

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

63.222

93.201

0.589
  recA Streptococcus mutans UA159

62.424

93.484

0.584
  recA Lactococcus lactis subsp. cremoris KW2

62.121

93.484

0.581
  recA Streptococcus pyogenes NZ131

62.006

93.201

0.578
  recA Streptococcus pneumoniae D39

61.515

93.484

0.575
  recA Streptococcus pneumoniae TIGR4

61.515

93.484

0.575
  recA Streptococcus pneumoniae Rx1

61.515

93.484

0.575
  recA Streptococcus pneumoniae R6

61.515

93.484

0.575
  recA Streptococcus mitis NCTC 12261

61.212

93.484

0.572
  recA Streptococcus mitis SK321

61.212

93.484

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

90.935

0.561

Multiple sequence alignment