Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACHMXA_RS02710 Genome accession   NZ_CP171978
Coordinates   551085..552188 (-) Length   367 a.a.
NCBI ID   WP_176665293.1    Uniprot ID   A0A7Y7I5J8
Organism   Variovorax sp. UC74_104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 546085..557188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXA_RS02675 (ACHMXA_02675) - 546256..546999 (-) 744 WP_395318248.1 hypothetical protein -
  ACHMXA_RS02680 (ACHMXA_02680) yiaA 547129..547569 (+) 441 WP_395318250.1 inner membrane protein YiaA -
  ACHMXA_RS02685 (ACHMXA_02685) - 547574..548428 (-) 855 WP_395318252.1 IclR family transcriptional regulator -
  ACHMXA_RS02690 (ACHMXA_02690) - 548442..549212 (-) 771 WP_395318254.1 SDR family oxidoreductase -
  ACHMXA_RS02695 (ACHMXA_02695) - 549443..550114 (+) 672 WP_395318256.1 RraA family protein -
  ACHMXA_RS02700 (ACHMXA_02700) - 550169..550600 (-) 432 WP_176665291.1 SRPBCC family protein -
  ACHMXA_RS02705 (ACHMXA_02705) recX 550581..551042 (-) 462 WP_176665292.1 recombination regulator RecX -
  ACHMXA_RS02710 (ACHMXA_02710) recA 551085..552188 (-) 1104 WP_176665293.1 recombinase RecA Machinery gene
  ACHMXA_RS02715 (ACHMXA_02715) - 552334..552819 (+) 486 WP_176665294.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHMXA_RS02720 (ACHMXA_02720) - 552890..553564 (+) 675 WP_125950336.1 response regulator transcription factor -
  ACHMXA_RS02725 (ACHMXA_02725) - 553597..554277 (-) 681 WP_395318260.1 hypothetical protein -
  ACHMXA_RS02730 (ACHMXA_02730) - 554702..556144 (+) 1443 WP_176665295.1 sensor histidine kinase -
  ACHMXA_RS02735 (ACHMXA_02735) - 556163..556363 (-) 201 WP_176665296.1 sporulation protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39169.93 Da        Isoelectric Point: 5.2156

>NTDB_id=1064710 ACHMXA_RS02710 WP_176665293.1 551085..552188(-) (recA) [Variovorax sp. UC74_104]
MDAVVKGSNIGANSEKAKALQAALAQIEKQFGKGTIMRLGEGEVLEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES
SGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAAL
TPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
TIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIIDKSGAWYAYNGEKIGQGRDNAREFL
RENPALSREIENKVRESLGVPLLAADADETPEKPQKATKADKADKGE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1064710 ACHMXA_RS02710 WP_176665293.1 551085..552188(-) (recA) [Variovorax sp. UC74_104]
ATGGACGCAGTAGTCAAGGGTTCGAACATCGGCGCCAACAGCGAGAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGAT
CGAAAAGCAGTTCGGCAAGGGCACCATCATGCGGCTGGGCGAGGGCGAGGTGCTGGAAGACATCCAGGTGGTCTCCACCG
GCTCGCTGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAATCG
TCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGCCGA
GCACGCCCTCGACGTGCAATACGCCCAGAAGCTCGGCGTGAACCTGTCGGACCTGCTGATCAGCCAGCCCGACACCGGCG
AGCAGGCCCTCGAGATCGTCGACTCGCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTGGTCGACTCGGTCGCCGCCCTC
ACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCG
CAAGCTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGC
ACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCTCCGTTCAA
GACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCCAAGA
TCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTCCTG
CGAGAGAACCCCGCGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCGTGCCGCTGCTGGCGGCCGATGC
CGACGAAACGCCCGAGAAGCCGCAGAAGGCAACCAAGGCCGACAAGGCCGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7I5J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.072

86.921

0.722
  recA Neisseria gonorrhoeae MS11

69.741

94.55

0.659
  recA Neisseria gonorrhoeae strain FA1090

69.741

94.55

0.659
  recA Neisseria gonorrhoeae MS11

69.741

94.55

0.659
  recA Acinetobacter baylyi ADP1

70.349

93.733

0.659
  recA Pseudomonas stutzeri DSM 10701

70.796

92.371

0.654
  recA Glaesserella parasuis strain SC1401

67.705

96.185

0.651
  recA Acinetobacter baumannii D1279779

71.166

88.828

0.632
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.605

89.646

0.624
  recA Vibrio cholerae strain A1552

69.605

89.646

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.588

92.643

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.173

89.646

0.602
  recA Helicobacter pylori strain NCTC11637

65.549

89.373

0.586
  recA Helicobacter pylori 26695

65.549

89.373

0.586
  recA Streptococcus mutans UA159

59.437

96.73

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.101

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

63.222

89.646

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.631

90.191

0.556
  recA Streptococcus pyogenes NZ131

61.702

89.646

0.553
  recA Streptococcus pneumoniae D39

60.725

90.191

0.548
  recA Streptococcus pneumoniae TIGR4

60.725

90.191

0.548
  recA Streptococcus pneumoniae Rx1

60.725

90.191

0.548
  recA Streptococcus pneumoniae R6

60.725

90.191

0.548
  recA Streptococcus mitis NCTC 12261

60.423

90.191

0.545
  recA Streptococcus mitis SK321

60.423

90.191

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

87.466

0.537

Multiple sequence alignment