Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACHEXK_RS15110 Genome accession   NZ_CP171842
Coordinates   3284106..3285143 (-) Length   345 a.a.
NCBI ID   WP_416547128.1    Uniprot ID   -
Organism   Limnohabitans sp. DCL3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3279106..3290143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXK_RS15085 (ACHEXK_15080) - 3279518..3280234 (-) 717 WP_416547124.1 TerC family protein -
  ACHEXK_RS15090 (ACHEXK_15085) sucD 3280383..3281279 (-) 897 WP_108365634.1 succinate--CoA ligase subunit alpha -
  ACHEXK_RS15095 (ACHEXK_15090) sucC 3281333..3282493 (-) 1161 WP_416547125.1 ADP-forming succinate--CoA ligase subunit beta -
  ACHEXK_RS15100 (ACHEXK_15095) argC 3282680..3283603 (+) 924 WP_416547126.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  ACHEXK_RS15105 (ACHEXK_15100) recX 3283624..3284082 (-) 459 WP_416547127.1 recombination regulator RecX -
  ACHEXK_RS15110 (ACHEXK_15105) recA 3284106..3285143 (-) 1038 WP_416547128.1 recombinase RecA Machinery gene
  ACHEXK_RS15115 (ACHEXK_15110) - 3285287..3285787 (+) 501 WP_416547129.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHEXK_RS15120 (ACHEXK_15115) - 3285892..3286566 (+) 675 WP_090044111.1 response regulator transcription factor -
  ACHEXK_RS15125 (ACHEXK_15120) - 3286617..3288080 (+) 1464 WP_416547130.1 sensor histidine kinase -
  ACHEXK_RS15130 (ACHEXK_15125) - 3288087..3288746 (-) 660 WP_416547131.1 glutathione S-transferase family protein -
  ACHEXK_RS15135 (ACHEXK_15130) - 3288775..3288975 (-) 201 WP_416547132.1 hypothetical protein -
  ACHEXK_RS15140 (ACHEXK_15135) - 3288972..3289745 (-) 774 WP_416547133.1 biotin--[acetyl-CoA-carboxylase] ligase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36976.39 Da        Isoelectric Point: 5.0471

>NTDB_id=1064496 ACHEXK_RS15110 WP_416547128.1 3284106..3285143(-) (recA) [Limnohabitans sp. DCL3]
MSDDNSEKSKALQAALAQIEKQFGKGTIMRLGEGEVIADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTL
QVISEMQRLGGTCAFVDAEHALDVQYAQNLGVNLQELLVSQPDTGEQALEIVDSLVRSGAVDLVVIDSVAALTPKAEIEG
DMGDSLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDDA
IGNETKVKVVKNKVAPPFKTAEFDILFGEGISREGEVIDMGVTAKIVDKSGAWYAYQGEKIGQGRDNAREFLRENPALAR
EIENKVRESLGIRLLESALAVPKGE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1064496 ACHEXK_RS15110 WP_416547128.1 3284106..3285143(-) (recA) [Limnohabitans sp. DCL3]
ATGAGCGACGACAACAGCGAAAAGTCCAAAGCCCTGCAAGCCGCCCTGGCCCAGATTGAAAAACAATTCGGCAAAGGCAC
CATCATGCGCCTGGGCGAAGGCGAAGTGATCGCTGACATCCAAGTGGTCTCGACCGGCTCTTTGGGCCTGGACATCGCGC
TGGGTGTGGGCGGTCTGCCCCGCGGCCGCGTGATCGAGATCTACGGCCCGGAGTCTTCCGGCAAAACCACCCTCACCTTG
CAAGTCATCTCCGAAATGCAGCGTCTGGGCGGCACCTGCGCCTTTGTGGACGCCGAGCACGCGCTGGACGTGCAATACGC
CCAAAACCTGGGTGTGAACCTGCAAGAGTTGCTGGTCAGCCAGCCCGACACCGGCGAGCAGGCCCTGGAAATCGTGGACA
GCCTGGTGCGCTCCGGCGCGGTGGACTTGGTCGTGATCGACTCGGTGGCAGCCCTCACGCCCAAGGCAGAAATTGAAGGC
GACATGGGCGACAGCCTGCCCGGCCTGCAAGCGCGTTTGATGAGCCAGGCCCTGCGCAAGCTGACCGCCACCATCAAAAA
GACCAACTGCACCGTCATCTTCATCAACCAAATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGACCACCACCG
GTGGCAACGCACTCAAGTTTTACGCCTCTGTGCGCCTCGATATCCGCCGCACCGGCACCATCAAGAAGGGCGACGACGCG
ATCGGCAACGAGACCAAAGTCAAAGTGGTCAAGAACAAAGTGGCGCCGCCCTTCAAGACGGCTGAGTTTGACATCTTGTT
TGGCGAAGGCATCAGCCGCGAAGGCGAGGTCATCGACATGGGCGTGACCGCCAAGATCGTTGACAAATCCGGCGCTTGGT
ACGCCTACCAGGGCGAAAAAATCGGCCAAGGCCGTGACAACGCTCGGGAATTTTTGCGCGAAAACCCGGCTTTGGCCCGC
GAAATCGAGAACAAGGTGCGCGAATCATTGGGCATCCGCTTGCTCGAATCAGCCCTTGCTGTGCCCAAAGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.847

91.014

0.745
  recA Neisseria gonorrhoeae MS11

70.958

96.812

0.687
  recA Neisseria gonorrhoeae MS11

70.958

96.812

0.687
  recA Neisseria gonorrhoeae strain FA1090

70.958

96.812

0.687
  recA Acinetobacter baylyi ADP1

71.646

95.072

0.681
  recA Pseudomonas stutzeri DSM 10701

71.646

95.072

0.681
  recA Acinetobacter baumannii D1279779

71.341

95.072

0.678
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.151

99.71

0.67
  recA Glaesserella parasuis strain SC1401

70.679

93.913

0.664
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.512

95.072

0.661
  recA Vibrio cholerae strain A1552

69.512

95.072

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.976

95.942

0.652
  recA Helicobacter pylori 26695

67.073

95.072

0.638
  recA Helicobacter pylori strain NCTC11637

67.073

95.072

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

65.749

94.783

0.623
  recA Streptococcus pyogenes NZ131

62.31

95.362

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

94.493

0.591
  recA Lactococcus lactis subsp. cremoris KW2

61.329

95.942

0.588
  recA Streptococcus mutans UA159

61.212

95.652

0.586
  recA Streptococcus mitis SK321

61.027

95.942

0.586
  recA Streptococcus pneumoniae Rx1

61.027

95.942

0.586
  recA Streptococcus pneumoniae D39

61.027

95.942

0.586
  recA Streptococcus pneumoniae R6

61.027

95.942

0.586
  recA Streptococcus pneumoniae TIGR4

61.027

95.942

0.586
  recA Streptococcus mitis NCTC 12261

61.027

95.942

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.037

93.913

0.583

Multiple sequence alignment