Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACG3JE_RS09360 Genome accession   NZ_CP171736
Coordinates   1848368..1849507 (-) Length   379 a.a.
NCBI ID   WP_394714055.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843368..1854507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JE_RS09335 (ACG3JE_09335) - 1844782..1846340 (-) 1559 Protein_1813 DUF2079 domain-containing protein -
  ACG3JE_RS09340 (ACG3JE_09340) - 1846489..1846806 (-) 318 WP_003104776.1 DUF1292 domain-containing protein -
  ACG3JE_RS09345 (ACG3JE_09345) ruvX 1846817..1847236 (-) 420 WP_003105581.1 Holliday junction resolvase RuvX -
  ACG3JE_RS09350 (ACG3JE_09350) - 1847233..1847502 (-) 270 WP_003104158.1 IreB family regulatory phosphoprotein -
  ACG3JE_RS09355 (ACG3JE_09355) spx 1847616..1848014 (-) 399 WP_003104943.1 transcriptional regulator Spx -
  ACG3JE_RS09360 (ACG3JE_09360) recA 1848368..1849507 (-) 1140 WP_394714055.1 recombinase RecA Machinery gene
  ACG3JE_RS09365 (ACG3JE_09365) - 1849586..1850856 (-) 1271 Protein_1819 competence/damage-inducible protein A -
  ACG3JE_RS09370 (ACG3JE_09370) - 1851245..1851796 (-) 552 WP_096633379.1 DNA-3-methyladenine glycosylase I -
  ACG3JE_RS09375 (ACG3JE_09375) ruvA 1851800..1852393 (-) 594 WP_003107862.1 Holliday junction branch migration protein RuvA -
  ACG3JE_RS09380 (ACG3JE_09380) - 1852395..1853618 (-) 1224 WP_003103803.1 MFS transporter -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40726.27 Da        Isoelectric Point: 4.8376

>NTDB_id=1063998 ACG3JE_RS09360 WP_394714055.1 1848368..1849507(-) (recA) [Streptococcus parauberis strain DB-M17]
MGKKVKKTEEITKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDSSIGKETKIKVVKNKIAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHKVRVQVGLIADDQAEEAPEKQEEVESDNLVLDLDNGIEIED

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1063998 ACG3JE_RS09360 WP_394714055.1 1848368..1849507(-) (recA) [Streptococcus parauberis strain DB-M17]
ATTGGCAAAAAAGTTAAAAAAACAGAAGAAATCACAAAAAAATTTGGTGATGATCGTCGTAAAGCGCTTGATGATGCTTT
AAAAAATATTGAGAAAGACTTTGGTAAAGGTGCAGTAATGCGTCTTGGCGAACGTGCCGAACAAAAAGTTCAAGTCATGA
GTTCAGGAAGTCTTGCATTGGATATTGCCCTAGGTGCTGGTGGTTACCCTAAAGGTCGTATTATTGAAATCTACGGACCA
GAATCATCTGGTAAAACAACTGTTGCTCTACACGCAGTGGCACAAGCACAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCTGAGCATGCCTTGGATCCTGCTTATGCAGCATCTCTAGGTGTTAATATTGATGAATTGCTATTATCACAACCAGACT
CTGGTGAACAAGGACTTGAAATTGCTGGTAAATTAATTGATTCTGGTGCTGTTGACTTAGTAGTTATCGACTCAGTAGCA
GCTTTAGTTCCACGTGCAGAAATTGATGGAGACATTGGTGATAGTCACGTTGGTCTACAAGCACGTATGATGAGTCAAGC
AATGCGTAAATTGTCTGCATCAATTAATAAAACCAAAACAATTGCTATTTTCATCAACCAATTACGTGAAAAAGTTGGAG
TTATGTTTGGTAATCCAGAAACAACTCCTGGTGGACGTGCTTTGAAATTTTATGCATCTGTTCGTTTAGATGTTCGTGGG
AATACTCAAATTAAAGGTACTGGTGATCAAAAAGACAGTAGTATCGGTAAAGAAACAAAAATTAAAGTTGTTAAAAATAA
AATTGCACCACCATTTAAAGTGGCAGAAGTTGAAATCATGTATGGTGAAGGTATTTCTCGTACAGGAGAATTAGTAAAAA
TCGCCTCTGATTTAGACATTATCCAGAAAGCTGGCGCATGGTTCTCATATAATGGTGAGAAAATTGGACAAGGGTCTGAA
AATGCTAAGAAATTCTTAGCTGATCATCCTGAAATCTTTGATGAAATTGACCATAAAGTACGTGTACAAGTTGGTTTAAT
TGCAGATGACCAAGCAGAAGAAGCACCAGAAAAACAAGAAGAAGTAGAATCAGATAACCTAGTCCTTGATTTGGATAACG
GTATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

91.557

100

0.916
  recA Streptococcus mutans UA159

89.034

100

0.9
  recA Streptococcus mitis NCTC 12261

85.302

100

0.858
  recA Streptococcus mitis SK321

84.595

100

0.855
  recA Streptococcus pneumoniae R6

83.679

100

0.852
  recA Streptococcus pneumoniae Rx1

83.679

100

0.852
  recA Streptococcus pneumoniae D39

83.679

100

0.852
  recA Streptococcus pneumoniae TIGR4

83.679

100

0.852
  recA Lactococcus lactis subsp. cremoris KW2

77.429

92.348

0.715
  recA Latilactobacillus sakei subsp. sakei 23K

68.406

91.029

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.947

89.446

0.554
  recA Neisseria gonorrhoeae MS11

59.714

92.348

0.551
  recA Neisseria gonorrhoeae MS11

59.714

92.348

0.551
  recA Neisseria gonorrhoeae strain FA1090

59.714

92.348

0.551
  recA Acinetobacter baylyi ADP1

60

91.029

0.546
  recA Glaesserella parasuis strain SC1401

59.412

89.71

0.533
  recA Acinetobacter baumannii D1279779

60.976

86.544

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.971

91.029

0.528
  recA Vibrio cholerae strain A1552

61.231

85.752

0.525
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

85.752

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

85.224

0.522
  recA Ralstonia pseudosolanacearum GMI1000

57.738

88.654

0.512
  recA Pseudomonas stutzeri DSM 10701

55.014

92.084

0.507
  recA Helicobacter pylori strain NCTC11637

57.576

87.071

0.501
  recA Helicobacter pylori 26695

57.576

87.071

0.501

Multiple sequence alignment