Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF0HZ_RS05960 Genome accession   NZ_CP171619
Coordinates   1193061..1194218 (-) Length   385 a.a.
NCBI ID   WP_394454908.1    Uniprot ID   -
Organism   Leuconostoc suionicum strain VITA-PB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188061..1199218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HZ_RS05940 (ACF0HZ_05945) - 1188654..1189535 (-) 882 WP_072613266.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  ACF0HZ_RS05945 (ACF0HZ_05950) - 1189699..1191039 (-) 1341 WP_394454904.1 sensor histidine kinase -
  ACF0HZ_RS05950 (ACF0HZ_05955) - 1191121..1192035 (-) 915 WP_394454906.1 phosphate ABC transporter substrate-binding protein -
  ACF0HZ_RS05955 (ACF0HZ_05960) - 1192286..1192978 (-) 693 WP_072613263.1 response regulator transcription factor -
  ACF0HZ_RS05960 (ACF0HZ_05965) recA 1193061..1194218 (-) 1158 WP_394454908.1 recombinase RecA Machinery gene
  ACF0HZ_RS05965 (ACF0HZ_05970) pgsA 1194358..1194939 (-) 582 WP_072613261.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACF0HZ_RS05970 (ACF0HZ_05975) - 1194950..1195825 (-) 876 WP_260342513.1 helix-turn-helix domain-containing protein -
  ACF0HZ_RS05975 (ACF0HZ_05980) yfmH 1195840..1197111 (-) 1272 WP_260342512.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACF0HZ_RS05980 (ACF0HZ_05985) yfmF 1197113..1198378 (-) 1266 WP_394454912.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41325.72 Da        Isoelectric Point: 4.8063

>NTDB_id=1062357 ACF0HZ_RS05960 WP_394454908.1 1193061..1194218(-) (recA) [Leuconostoc suionicum strain VITA-PB2]
MVAKKTTKKDDQAKKDGRRAALDEALKKIEKNFGKGSVMTLGDNALTQIETIPSGSVKIDVALGVGGYPKGRIIEVYGPE
SSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAA
LVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRS
TQIKDGTDVTGNLTKVKIIKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGREKAKDY
LDDPEHTALRQELYVKVRQAYGIDSNANGTAVSNTEAQAEKSDEQINLPDLDTSADDSLTDEPIV

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1062357 ACF0HZ_RS05960 WP_394454908.1 1193061..1194218(-) (recA) [Leuconostoc suionicum strain VITA-PB2]
ATGGTAGCAAAGAAAACGACTAAAAAAGACGATCAAGCAAAGAAAGATGGTCGTCGAGCCGCGCTAGATGAAGCGCTAAA
GAAAATTGAAAAGAACTTTGGAAAAGGTTCAGTGATGACGTTAGGAGATAACGCGCTAACGCAGATCGAAACGATCCCTT
CTGGTTCTGTTAAAATTGATGTTGCTTTGGGTGTGGGTGGCTATCCCAAGGGACGTATTATTGAAGTATACGGTCCAGAA
TCATCCGGTAAAACAACCATCGCACTTCATGCAGTTGCTGAAGTGCAAAAGCAAGGTGGAACGGCTGCCTATATTGATGC
TGAAAATGCTTTGGATGTTAAATACGCTGAAGCCCTTGGCGTTAAAAAAGACGAATTACTCTTGTCACAACCGGATACAG
GCGAACAGGGATTAGAAATTGCTGATGCTTTGGTACAATCAGGTGCTGTAGACATGATTGTTGTTGACTCAGTTGCTGCA
TTAGTACCTCGTGCAGAAATCGAAGGTGAAATGGGTGATGCGCACGTTGGATTGCAAGCTCGTTTGATGAGTCAAGCACT
ACGTAAGTTAGCGGGAACTTTAAACCGAACGGGAACAATTGCTATTTTCATCAATCAAATTCGTGAAAAAGTCGGCGTAA
TGTTTGGAAACCCAGAAACTACACCCGGTGGTCGTGCACTAAAGTTCTATTCGACAGTACGTTTAGAAGTTAGACGTTCA
ACGCAAATTAAAGACGGTACTGATGTCACCGGTAATTTGACAAAAGTTAAAATTATTAAAAACAAGGTGGCTCCACCATT
CAAAGTTGCTGAAGTCGATATTATGTATGGGCATGGGATTTCACAAACAGGTGAAATTCTCGATCTTGCTGTTGATCAAG
ATATTATCGATAAAGCAGGTGCATGGTACGCCTACGAAGGTGAGCGAATTGGTCAAGGGCGTGAGAAAGCCAAAGACTAT
TTAGATGATCCTGAGCATACTGCATTGCGACAAGAACTATATGTCAAGGTGCGTCAAGCGTATGGTATTGATTCTAATGC
GAATGGTACTGCCGTTTCAAATACGGAAGCTCAGGCGGAAAAATCTGATGAACAAATTAATTTGCCAGATTTGGATACAT
CAGCAGATGATTCTTTAACAGATGAACCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

73.611

93.506

0.688
  recA Streptococcus mitis SK321

63.467

97.403

0.618
  recA Streptococcus mitis NCTC 12261

63.467

97.403

0.618
  recA Streptococcus mutans UA159

61.518

99.221

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

70.821

85.455

0.605
  recA Streptococcus pyogenes NZ131

66.859

90.13

0.603
  recA Streptococcus pneumoniae R6

63.043

95.584

0.603
  recA Streptococcus pneumoniae TIGR4

63.043

95.584

0.603
  recA Streptococcus pneumoniae D39

63.043

95.584

0.603
  recA Streptococcus pneumoniae Rx1

63.043

95.584

0.603
  recA Lactococcus lactis subsp. cremoris KW2

65.33

90.649

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.249

89.87

0.532
  recA Ralstonia pseudosolanacearum GMI1000

63.81

81.818

0.522
  recA Glaesserella parasuis strain SC1401

54.372

95.065

0.517
  recA Pseudomonas stutzeri DSM 10701

57.225

89.87

0.514
  recA Neisseria gonorrhoeae MS11

58.112

88.052

0.512
  recA Neisseria gonorrhoeae MS11

58.112

88.052

0.512
  recA Neisseria gonorrhoeae strain FA1090

58.112

88.052

0.512
  recA Acinetobacter baylyi ADP1

59.633

84.935

0.506
  recA Acinetobacter baumannii D1279779

60.185

84.156

0.506
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.27

87.532

0.501
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

84.156

0.499
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.45

80.779

0.488
  recA Vibrio cholerae strain A1552

60.45

80.779

0.488
  recA Helicobacter pylori strain NCTC11637

56.748

84.675

0.481
  recA Helicobacter pylori 26695

56.748

84.675

0.481

Multiple sequence alignment