Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF0HT_RS08015 Genome accession   NZ_CP171612
Coordinates   1661782..1662831 (-) Length   349 a.a.
NCBI ID   WP_047172461.1    Uniprot ID   A7KJJ5
Organism   Staphylococcus xylosus strain 14BME18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1656782..1667831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HT_RS08000 (ACF0HT_08000) - 1658367..1659155 (-) 789 WP_017724325.1 TIGR00282 family metallophosphoesterase -
  ACF0HT_RS08005 (ACF0HT_08005) - 1659322..1659537 (+) 216 WP_318752168.1 hypothetical protein -
  ACF0HT_RS08010 (ACF0HT_08010) rny 1659740..1661299 (-) 1560 WP_047172460.1 ribonuclease Y -
  ACF0HT_RS08015 (ACF0HT_08015) recA 1661782..1662831 (-) 1050 WP_047172461.1 recombinase RecA Machinery gene
  ACF0HT_RS08020 (ACF0HT_08020) - 1663005..1664147 (-) 1143 WP_394523365.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACF0HT_RS08025 (ACF0HT_08025) pgsA 1664350..1664928 (-) 579 WP_042362816.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACF0HT_RS08030 (ACF0HT_08030) - 1664980..1665372 (-) 393 WP_029377447.1 RodZ family helix-turn-helix domain-containing protein -
  ACF0HT_RS08035 (ACF0HT_08035) - 1665403..1666233 (-) 831 WP_029377448.1 YmfK family protein -
  ACF0HT_RS08040 (ACF0HT_08040) ymfI 1666419..1667123 (-) 705 WP_047172463.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37719.66 Da        Isoelectric Point: 5.0032

>NTDB_id=1062344 ACF0HT_RS08015 WP_047172461.1 1661782..1662831(-) (recA) [Staphylococcus xylosus strain 14BME18]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPTVKAEIDR
KLREKLGIFDGDVEEPEANNTATLLDEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1062344 ACF0HT_RS08015 WP_047172461.1 1661782..1662831(-) (recA) [Staphylococcus xylosus strain 14BME18]
TTGGATAACGATCGTCAAAAGGCTTTAGATACAGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGCGCGGTAATGAA
ATTGGGTGATAACGAGGCACGCAAAGTTTCAAGTGTTTCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGAGTAGGTG
GTTACCCTAAGGGTAGAATCGTAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACGACTGTGGCTCTTCATGCCATTGCG
GAAGTTCAAAGAAATGGAGGCGTGGCAGCTTTTATTGACGCTGAACACGCATTAGACCCAGTTTACGCAGAAGCATTGGG
TGTTGATATTCAAAATTTATACCTATCTCAACCTGACCATGGGGAACAAGGTTTAGAGATTGCAGAAGCGTTTGTTAGAA
GTGGAGCTGTAGACATAGTTGTTGTTGATTCCGTTGCAGCATTAACACCTAAAGCAGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCGCGTTTGATGTCACAAGCCCTAAGAAAACTTTCAGGTGCGATATCTAAATCAAATACGAC
TGCTGTATTCATTAACCAAATTCGTGAGAAAGTCGGTGTTATGTTCGGTAATCCTGAAGTTACACCAGGTGGCCGTGCAC
TGAAATTCTACAGTTCTGTTCGTTTAGAAGTACGCCGTGCAGAACAATTAAAACAAGGACAAGATATTGTCGGTAATAGA
ACTAAAATTAAAGTTGTTAAGAATAAAGTGGCACCACCATTTAGAGTTGCTGAAGTCGATATTATGTACGGTAAAGGTAT
CTCTAAAGAGGGAGAATTGATCGATTTAGGTGTTGAAAATGAAATCGTTGATAAGTCAGGTGCTTGGTATTCTTATAATG
GCGACAGAATGGGACAAGGTAAAGAAAATGTAAAATCTTACCTTAAAGAAAACCCTACTGTCAAAGCAGAAATAGATAGA
AAACTAAGAGAAAAATTAGGAATATTTGATGGAGATGTTGAAGAGCCAGAAGCTAACAATACAGCGACACTTTTGGATGA
AGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7KJJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

93.41

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

71.341

93.983

0.67
  recA Streptococcus mutans UA159

63.143

100

0.633
  recA Streptococcus pyogenes NZ131

66.869

94.269

0.63
  recA Streptococcus pneumoniae D39

64.035

97.994

0.628
  recA Streptococcus pneumoniae Rx1

64.035

97.994

0.628
  recA Streptococcus pneumoniae R6

64.035

97.994

0.628
  recA Streptococcus pneumoniae TIGR4

64.035

97.994

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.559

94.842

0.622
  recA Streptococcus mitis SK321

65.165

95.415

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.653

94.269

0.619
  recA Neisseria gonorrhoeae MS11

65.653

94.269

0.619
  recA Neisseria gonorrhoeae MS11

65.653

94.269

0.619
  recA Streptococcus mitis NCTC 12261

64.565

95.415

0.616
  recA Acinetobacter baylyi ADP1

65.337

93.41

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

94.269

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.41

0.605
  recA Vibrio cholerae strain A1552

64.724

93.41

0.605
  recA Helicobacter pylori 26695

64.329

93.983

0.605
  recA Acinetobacter baumannii D1279779

64.417

93.41

0.602
  recA Helicobacter pylori strain NCTC11637

64.024

93.983

0.602
  recA Ralstonia pseudosolanacearum GMI1000

65.176

89.685

0.585
  recA Pseudomonas stutzeri DSM 10701

61.963

93.41

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.842

0.573
  recA Glaesserella parasuis strain SC1401

61.18

92.264

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.502

91.404

0.553

Multiple sequence alignment