Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACGGKE_RS11840 Genome accession   NZ_CP171454
Coordinates   2382407..2383480 (-) Length   357 a.a.
NCBI ID   WP_394438101.1    Uniprot ID   -
Organism   Sphingobium naphthae strain RL-ZY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2377407..2388480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGGKE_RS11820 (ACGGKE_11825) - 2377655..2378002 (-) 348 WP_394438092.1 hypothetical protein -
  ACGGKE_RS11825 (ACGGKE_11830) - 2378073..2379320 (-) 1248 WP_394438094.1 putative DNA modification/repair radical SAM protein -
  ACGGKE_RS11830 (ACGGKE_11835) - 2379461..2380642 (+) 1182 WP_394438096.1 FAD-dependent oxidoreductase -
  ACGGKE_RS11835 (ACGGKE_11840) - 2380652..2381443 (-) 792 WP_394438098.1 transglutaminase family protein -
  ACGGKE_RS11840 (ACGGKE_11845) recA 2382407..2383480 (-) 1074 WP_394438101.1 recombinase RecA Machinery gene
  ACGGKE_RS11845 (ACGGKE_11850) - 2383603..2383959 (-) 357 WP_317517261.1 response regulator -
  ACGGKE_RS11850 (ACGGKE_11855) - 2384054..2386477 (-) 2424 WP_394438103.1 response regulator -
  ACGGKE_RS11855 (ACGGKE_11860) - 2386524..2387114 (-) 591 WP_394438105.1 DUF2062 domain-containing protein -
  ACGGKE_RS11860 (ACGGKE_11865) smpB 2387114..2387596 (-) 483 WP_228167119.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38392.06 Da        Isoelectric Point: 5.3602

>NTDB_id=1061281 ACGGKE_RS11840 WP_394438101.1 2382407..2383480(-) (recA) [Sphingobium naphthae strain RL-ZY01]
MTAMLQLIDSKKTGNMDRQKALEAALAQIDRAFGKGSAMKLGSREKMEIEAISTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDDIVGNTTKVKVVKNKVAPPFKQVEFDIMYGEGISKIGELLDIGVKAGLVEKSGAWFSYDSVRIGQGRENAKTY
LKEHPELADRLEKAIRGKTEEVAEGMMTGPDAEDDGE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1061281 ACGGKE_RS11840 WP_394438101.1 2382407..2383480(-) (recA) [Sphingobium naphthae strain RL-ZY01]
ATGACCGCAATGCTCCAACTTATCGATTCCAAGAAGACGGGGAATATGGACAGACAGAAAGCATTGGAGGCGGCGCTCGC
CCAGATCGACCGCGCCTTCGGCAAGGGCTCGGCGATGAAGCTGGGATCGCGCGAGAAGATGGAGATCGAAGCGATCTCGA
CCGGATCGCTCGGCCTCGACATCGCGCTGGGCATTGGCGGCCTGCCCAAGGGCCGCATCATCGAGATTTACGGGCCCGAA
AGCTCGGGCAAGACGACGCTGACGCTGCATGCCATCGCCGAAGCGCAGAAGGCGGGCGGGACCGCGGCCTTCGTCGACGC
CGAACATGCGCTCGACCCGGTCTATGCCAAGAAGCTGGGCGTCGACATCGACGAACTGATCGTGTCGCAGCCCGATACGG
GCGAGCAGGCGCTGGAAATCGTCGACACGCTGGTCCGCTCCAACGCGATCGACGTGCTGGTGGTTGACTCGGTCGCCGCG
CTGGTTCCCCGCGCGGAAATCGAAGGCGAAATGGGCGACAGCCATGTCGGCCTGCAGGCGCGGTTGATGAGCCAGGCGCT
GCGCAAGCTGACCGGGTCGATCTCGCGCTCCAAATGCATGGTGATCTTCATCAACCAGGTGCGCATGAAGATCGGCGTGA
TGTACGGTAATCCGGAAACCACGACCGGCGGCAACGCGCTCAAATTCTACGCCTCCGTCCGTCTCGACATTCGCCGCACC
GGCCAGATCAAGGATCGCGACGATATCGTCGGCAACACGACCAAGGTGAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAGGGCATCTCCAAGATCGGCGAACTGCTCGACATCGGCGTCAAGGCCG
GGCTGGTCGAGAAGTCGGGCGCCTGGTTCTCCTATGACTCGGTCCGCATCGGCCAGGGTCGCGAGAATGCCAAGACCTAT
CTGAAGGAACATCCCGAACTGGCCGACCGGCTGGAAAAGGCGATCCGCGGCAAGACCGAGGAAGTGGCCGAGGGCATGAT
GACCGGACCCGATGCGGAGGATGATGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.639

94.678

0.65
  recA Glaesserella parasuis strain SC1401

72.414

89.356

0.647
  recA Neisseria gonorrhoeae strain FA1090

67.449

95.518

0.644
  recA Neisseria gonorrhoeae MS11

67.449

95.518

0.644
  recA Neisseria gonorrhoeae MS11

67.449

95.518

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.938

89.636

0.636
  recA Vibrio cholerae strain A1552

70.938

89.636

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.082

95.798

0.633
  recA Acinetobacter baumannii D1279779

69.688

89.636

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.169

92.997

0.625
  recA Acinetobacter baylyi ADP1

69.375

89.636

0.622
  recA Helicobacter pylori strain NCTC11637

65.192

94.958

0.619
  recA Ralstonia pseudosolanacearum GMI1000

66.667

92.437

0.616
  recA Helicobacter pylori 26695

64.897

94.958

0.616
  recA Streptococcus pneumoniae R6

63.663

96.359

0.613
  recA Streptococcus pneumoniae D39

63.663

96.359

0.613
  recA Streptococcus pneumoniae TIGR4

63.663

96.359

0.613
  recA Streptococcus pneumoniae Rx1

63.663

96.359

0.613
  recA Streptococcus mitis NCTC 12261

62.791

96.359

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

67.5

89.636

0.605
  recA Streptococcus mitis SK321

61.96

97.199

0.602
  recA Streptococcus pyogenes NZ131

63.363

93.277

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.651

92.997

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

63.75

89.636

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.631

92.717

0.571
  recA Streptococcus mutans UA159

61.329

92.717

0.569

Multiple sequence alignment