Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACGTGP_RS12520 Genome accession   NZ_CP171398
Coordinates   2698320..2699369 (+) Length   349 a.a.
NCBI ID   WP_000344169.1    Uniprot ID   N9L2B2
Organism   Acinetobacter baumannii strain T24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2693320..2704369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS12485 (ACGTGP_12485) gigD 2694707..2695156 (+) 450 WP_001099948.1 Lrp/AsnC family transcriptional regulator GigD -
  ACGTGP_RS12490 (ACGTGP_12490) - 2695202..2695738 (+) 537 WP_017725244.1 GNAT family N-acetyltransferase -
  ACGTGP_RS12495 (ACGTGP_12495) - 2695790..2696083 (-) 294 WP_000689660.1 hypothetical protein -
  ACGTGP_RS12500 (ACGTGP_12500) - 2696198..2696434 (-) 237 WP_000525037.1 hypothetical protein -
  ACGTGP_RS12505 (ACGTGP_12505) - 2696533..2696892 (-) 360 WP_000798361.1 YcgJ family protein -
  ACGTGP_RS12510 (ACGTGP_12510) - 2697064..2697750 (+) 687 WP_002037182.1 HAD-IA family hydrolase -
  ACGTGP_RS12515 (ACGTGP_12515) - 2697734..2698174 (+) 441 WP_023896579.1 RNA-binding S4 domain-containing protein -
  ACGTGP_RS12520 (ACGTGP_12520) recA 2698320..2699369 (+) 1050 WP_000344169.1 recombinase RecA Machinery gene
  ACGTGP_RS12525 (ACGTGP_12525) - 2699423..2699905 (+) 483 WP_000476756.1 regulatory protein RecX -
  ACGTGP_RS12535 (ACGTGP_12535) - 2700333..2701217 (+) 885 WP_002058380.1 YbgF trimerization domain-containing protein -
  ACGTGP_RS12540 (ACGTGP_12540) lpxA 2701272..2702060 (-) 789 WP_000064875.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  ACGTGP_RS12545 (ACGTGP_12545) fabZ 2702057..2702542 (-) 486 WP_394555888.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACGTGP_RS12550 (ACGTGP_12550) lpxD 2702549..2703619 (-) 1071 WP_000868103.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  ACGTGP_RS12555 (ACGTGP_12555) - 2703624..2704127 (-) 504 WP_001037943.1 OmpH family outer membrane protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37891.25 Da        Isoelectric Point: 4.7769

>NTDB_id=1061156 ACGTGP_RS12520 WP_000344169.1 2698320..2699369(+) (recA) [Acinetobacter baumannii strain T24]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENTQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1061156 ACGTGP_RS12520 WP_000344169.1 2698320..2699369(+) (recA) [Acinetobacter baumannii strain T24]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAGATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTTATCGATGCTGAGCACGCCCTGGATCCTCAATATGCACGTAAGCTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGTGCAATTGATTTAATCGTTGTGGACTCGGTGGCTGCACTTACACCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCGCGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAATTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAACGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCTGTACAACAGGATATCGTACAGAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATACTCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9L2B2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

99.713

100

0.997

  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926

  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719

  recA Vibrio cholerae strain A1552

73.7

93.696

0.691

  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691

  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665

  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665

  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653

  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653

  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605

  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602

  recA Helicobacter pylori 26695

63.914

93.696

0.599

  recA Streptococcus pyogenes NZ131

58.924

100

0.596

  recA Streptococcus mitis SK321

60.411

97.708

0.59

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587

  recA Streptococcus pneumoniae D39

61.963

93.41

0.579

  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579

  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579

  recA Streptococcus pneumoniae R6

61.963

93.41

0.579

  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579

  recA Streptococcus mutans UA159

61.585

93.983

0.579

  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576

  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544

  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539


Multiple sequence alignment