Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFFRD_RS22950 Genome accession   NZ_CP171148
Coordinates   4090764..4091843 (+) Length   359 a.a.
NCBI ID   WP_179074924.1    Uniprot ID   -
Organism   Nostoc sp. C110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4085764..4096843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFFRD_RS22925 xseB 4086847..4087080 (-) 234 WP_392477632.1 exodeoxyribonuclease VII small subunit -
  ACFFRD_RS22930 xseA 4087073..4088358 (-) 1286 Protein_3358 exodeoxyribonuclease VII large subunit -
  ACFFRD_RS22935 - 4088507..4088749 (+) 243 WP_392477634.1 helix-turn-helix domain-containing protein -
  ACFFRD_RS22940 - 4088800..4089786 (+) 987 WP_392477637.1 DNA-methyltransferase -
  ACFFRD_RS22945 - 4089804..4090397 (-) 594 WP_392477638.1 restriction endonuclease -
  ACFFRD_RS22950 recA 4090764..4091843 (+) 1080 WP_179074924.1 recombinase RecA Machinery gene
  ACFFRD_RS22955 - 4092063..4092785 (-) 723 WP_392477640.1 FHA domain-containing protein -
  ACFFRD_RS22960 - 4093373..4094977 (-) 1605 WP_114082453.1 serine/threonine-protein kinase -
  ACFFRD_RS22965 - 4095382..4096212 (-) 831 WP_163937748.1 squalene/phytoene synthase family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38572.98 Da        Isoelectric Point: 4.9023

>NTDB_id=1060303 ACFFRD_RS22950 WP_179074924.1 4090764..4091843(+) (recA) [Nostoc sp. C110]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDIHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCIVDLAEETSIIVRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
EIKKLVREKLDKGAVVSANSVAKASEEDEEEDVDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1060303 ACFFRD_RS22950 WP_179074924.1 4090764..4091843(+) (recA) [Nostoc sp. C110]
ATGGCTATCAACACCGATACTTCCGGCAAGCAAAAAGCACTGACTATGGTGCTAAACCAGATTGAGCGCAGCTTTGGTAA
AGGGGCAATCATGCGCCTGGGCGACGCTACCCGGATGCGGGTGGAAACAATTTCTAGTGGGGCGCTTACCCTAGATTTAG
CATTGGGTGGTGGTTTACCCAAGGGGCGGGTCATAGAAATTTATGGGCCGGAAAGTTCCGGTAAGACTACAGTAGCGCTA
CACGCGCTCGCCGAAGTGCAAAGAAATGGCGGTATTGCTGCCTTCGTTGATGCTGAACACGCCCTTGATCCTACTTATGC
TGCGGCATTGGGTGTAGATATTGACAATTTGCTGATTTCCCAACCTGACACTGGCGAATCAGCTTTGGAAATTGTCGATC
AGCTTGTACGCTCTGCTGCGGTTGATATTGTAGTCATTGACTCAGTAGCAGCACTGGTTCCCCGTGCTGAAATTGAAGGC
GATATGGGTGATATTCACGTTGGTTTGCAAGCGCGGTTGATGAGCCAAGCCCTGCGTAAAATTACGGGCAACATTGGTAA
ATCTGGTTGTACAGTAATTTTCATTAACCAGTTGCGGCAAAAAATCGGTGTTACCTACGGTAGCCCAGAAACCACGACTG
GAGGTAATGCATTGAAATTTTACGCTTCGGTGCGCTTGGATATTCGTCGAATTCAAACCTTGAAGAAAGGTACAGATGAA
TTTGGTAATCGCGTTAAAGTCAAAGTCGCCAAAAATAAAGTAGCGCCGCCGTTCAGAATAGCAGAATTCGATATTATTTT
TGGTAAAGGGATTTCTACCTTGGGTTGTATTGTAGACTTGGCAGAAGAAACTTCCATTATCGTCCGCAAGGGGGCTTGGT
ATAGTTACAACGGCGATAATATCTCCCAAGGACGAGACAACGCCATTAAGTATCTAGAAGAAAAGCCTGAATTCGCTGAA
GAAATTAAGAAACTGGTACGTGAAAAGCTAGATAAAGGTGCTGTTGTTTCTGCTAACTCTGTAGCTAAAGCCAGTGAAGA
AGATGAAGAGGAAGATGTCGATTTAGAACCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.506

96.936

0.616
  recA Acinetobacter baumannii D1279779

63.218

96.936

0.613
  recA Pseudomonas stutzeri DSM 10701

63.824

94.708

0.604
  recA Ralstonia pseudosolanacearum GMI1000

63.746

92.201

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

63.253

92.479

0.585
  recA Streptococcus pneumoniae Rx1

58.31

98.886

0.577
  recA Streptococcus pneumoniae TIGR4

58.31

98.886

0.577
  recA Streptococcus pneumoniae R6

58.31

98.886

0.577
  recA Streptococcus pneumoniae D39

58.31

98.886

0.577
  recA Neisseria gonorrhoeae strain FA1090

64.375

89.136

0.574
  recA Neisseria gonorrhoeae MS11

64.375

89.136

0.574
  recA Neisseria gonorrhoeae MS11

64.375

89.136

0.574
  recA Helicobacter pylori 26695

61.747

92.479

0.571
  recA Helicobacter pylori strain NCTC11637

61.747

92.479

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

57.746

98.886

0.571
  recA Glaesserella parasuis strain SC1401

58.621

96.936

0.568
  recA Streptococcus mutans UA159

58.453

97.214

0.568
  recA Streptococcus mitis NCTC 12261

57.465

98.886

0.568
  recA Streptococcus pyogenes NZ131

57.79

98.329

0.568
  recA Streptococcus mitis SK321

57.022

99.164

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.261

96.1

0.56
  recA Vibrio cholerae strain A1552

62.112

89.694

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

89.694

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

91.365

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.443

89.972

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.201

0.529

Multiple sequence alignment