Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF3M1_RS05460 Genome accession   NZ_CP171131
Coordinates   1205382..1206422 (+) Length   346 a.a.
NCBI ID   WP_394005189.1    Uniprot ID   -
Organism   Luteimonas sp. WGS1318     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200382..1211422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3M1_RS05435 (ACF3M1_05435) truD 1200383..1201474 (+) 1092 WP_394004592.1 tRNA pseudouridine(13) synthase TruD -
  ACF3M1_RS05440 (ACF3M1_05440) - 1201540..1201770 (+) 231 WP_394004593.1 hypothetical protein -
  ACF3M1_RS05445 (ACF3M1_05445) - 1201780..1202445 (-) 666 WP_394004594.1 response regulator -
  ACF3M1_RS05450 (ACF3M1_05450) - 1202616..1204475 (+) 1860 WP_394004595.1 3-hydroxybutyrate oligomer hydrolase family protein -
  ACF3M1_RS05455 (ACF3M1_05455) lexA 1204553..1205197 (+) 645 WP_394004596.1 transcriptional repressor LexA -
  ACF3M1_RS05460 (ACF3M1_05460) recA 1205382..1206422 (+) 1041 WP_394005189.1 recombinase RecA Machinery gene
  ACF3M1_RS05465 (ACF3M1_05465) - 1206400..1206999 (+) 600 WP_394004597.1 regulatory protein RecX -
  ACF3M1_RS05470 (ACF3M1_05470) alaS 1207166..1209811 (+) 2646 WP_394005190.1 alanine--tRNA ligase -
  ACF3M1_RS05475 (ACF3M1_05475) csrA 1209969..1210190 (+) 222 WP_394004598.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37246.90 Da        Isoelectric Point: 5.1791

>NTDB_id=1060278 ACF3M1_RS05460 WP_394005189.1 1205382..1206422(+) (recA) [Luteimonas sp. WGS1318]
MDENKKRALSAALSQIEKQFGKGSVIRMGDRVSEVVPVIPTGSLQLDLALGIGGLPRGRVIEVYGPESSGKTTLTLQTIA
QCQKMGGVAAFIDAEHALDPTYAAKLGVNVEDLLVSQPDTGEQALEIADMLVRSNSVDMVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVFFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIDMGVEAKLIEKAGAWYSAGDERIGQGKENARQYLKDNPEVAARI
EAGIREKLLPAAVLAAAAANEESDDD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1060278 ACF3M1_RS05460 WP_394005189.1 1205382..1206422(+) (recA) [Luteimonas sp. WGS1318]
ATGGACGAGAACAAGAAGCGCGCGCTGTCCGCAGCCCTGAGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATCCG
CATGGGCGACCGCGTGTCTGAAGTGGTGCCGGTGATCCCGACCGGTTCGCTGCAGCTCGATCTCGCACTCGGCATCGGCG
GCCTGCCGCGCGGCCGTGTCATCGAAGTCTATGGTCCGGAGTCCTCGGGCAAGACCACGCTGACCCTGCAGACGATCGCG
CAGTGCCAGAAGATGGGCGGCGTCGCGGCGTTCATCGATGCCGAGCACGCGCTCGATCCGACGTACGCCGCGAAGCTCGG
CGTCAACGTCGAGGACCTGCTGGTCTCGCAGCCCGACACCGGTGAGCAGGCGCTCGAAATCGCCGACATGCTGGTGCGCT
CGAACTCGGTCGACATGGTCGTCATCGACTCGGTCGCCGCGCTGACCCCGCGCGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCCGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCAGCAACTGCAT
GGTGTTCTTCATCAACCAACTGCGCATGAAGATCGGCATCATGATGCCGGGCCAGAGCCCCGAGACCACGACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTCGTCAAGAACAAGATGGCGCCCCCGTTCAAGCAGGTCATCACCGAAATCCTCTACGGCGA
AGGCATCAGCCGCGAGGGCGAGCTGATCGACATGGGTGTCGAAGCCAAGCTGATTGAAAAGGCGGGCGCCTGGTACAGCG
CGGGCGACGAGCGGATCGGGCAGGGCAAGGAAAATGCCCGCCAGTACCTCAAGGACAACCCGGAGGTCGCCGCGCGCATC
GAGGCGGGGATCCGCGAGAAGCTGTTGCCTGCAGCAGTGCTGGCGGCCGCGGCGGCCAATGAAGAAAGCGACGACGACTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.515

95.376

0.682
  recA Pseudomonas stutzeri DSM 10701

71.429

95.087

0.679
  recA Acinetobacter baylyi ADP1

68.116

99.711

0.679
  recA Acinetobacter baumannii D1279779

67.63

100

0.676
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.185

100

0.662
  recA Vibrio cholerae strain A1552

66.185

100

0.662
  recA Glaesserella parasuis strain SC1401

64.451

100

0.645
  recA Neisseria gonorrhoeae MS11

68.098

94.22

0.642
  recA Neisseria gonorrhoeae MS11

68.098

94.22

0.642
  recA Neisseria gonorrhoeae strain FA1090

68.098

94.22

0.642
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.411

98.555

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

96.243

0.592
  recA Helicobacter pylori strain NCTC11637

61.89

94.798

0.587
  recA Helicobacter pylori 26695

61.585

94.798

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

62.037

93.642

0.581
  recA Streptococcus pyogenes NZ131

56.695

100

0.575
  recA Streptococcus mitis SK321

60.308

93.931

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.681

93.353

0.566
  recA Streptococcus mutans UA159

59.327

94.509

0.561
  recA Streptococcus mitis NCTC 12261

59.692

93.931

0.561
  recA Streptococcus pneumoniae Rx1

59.146

94.798

0.561
  recA Streptococcus pneumoniae D39

59.146

94.798

0.561
  recA Streptococcus pneumoniae R6

59.146

94.798

0.561
  recA Streptococcus pneumoniae TIGR4

59.146

94.798

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.376

0.555
  recA Lactococcus lactis subsp. cremoris KW2

56.923

93.931

0.535

Multiple sequence alignment