Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFG4S_RS14740 Genome accession   NZ_CP170991
Coordinates   3373172..3374251 (+) Length   359 a.a.
NCBI ID   WP_392535495.1    Uniprot ID   -
Organism   Nostoc sp. C117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3368172..3379251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFG4S_RS14720 - 3368670..3369260 (-) 591 WP_392535491.1 chromophore lyase CpcT/CpeT -
  ACFG4S_RS14725 - 3369482..3370711 (+) 1230 WP_392535492.1 tetratricopeptide repeat protein -
  ACFG4S_RS14730 - 3370948..3371928 (-) 981 WP_392535493.1 aldo/keto reductase -
  ACFG4S_RS14735 - 3372370..3372678 (-) 309 WP_392535494.1 RNA recognition motif domain-containing protein -
  ACFG4S_RS14740 recA 3373172..3374251 (+) 1080 WP_392535495.1 recombinase RecA Machinery gene
  ACFG4S_RS14745 - 3374333..3375055 (-) 723 WP_392535496.1 FHA domain-containing protein -
  ACFG4S_RS14750 - 3375909..3377510 (-) 1602 WP_392535497.1 pentapeptide repeat-containing protein -
  ACFG4S_RS14755 - 3378394..3378516 (-) 123 WP_392535498.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38589.99 Da        Isoelectric Point: 4.8950

>NTDB_id=1059949 ACFG4S_RS14740 WP_392535495.1 3373172..3374251(+) (recA) [Nostoc sp. C117]
MAINTDTSGKQKALSMVLNQIERTFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCLVDLAEETGIIIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
QIKQLVREKLDKGAVVSANSVAKTSEDEEEEEMDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1059949 ACFG4S_RS14740 WP_392535495.1 3373172..3374251(+) (recA) [Nostoc sp. C117]
ATGGCTATCAACACCGATACTTCTGGCAAGCAAAAAGCGTTGAGTATGGTACTCAACCAAATTGAGCGCACCTTCGGTAA
AGGAGCAATTATGCGCCTGGGGGATGCTACTCGGATGCGGGTGGAGACGATTTCCAGTGGGGCACTGACCCTAGATTTAG
CATTGGGAGGCGGTTTACCTAAGGGGCGAGTGATTGAGATTTATGGGCCGGAAAGTTCTGGTAAAACCACGGTAGCATTA
CACGCCCTTGCTGAAGTCCAAAGAAATGGCGGGATTGCAGCCTTTGTTGATGCCGAACATGCCCTTGATCCCACCTACGC
TGCGGCATTAGGTGTGGATATTGACAATTTGCTGATTTCCCAACCTGACACAGGCGAATCAGCTTTAGAAATTGTCGATC
AGCTTGTTCGCTCTGCTGCCGTTGATATTGTAGTAATTGACTCAGTTGCGGCACTAGTTCCCCGTGCTGAAATTGAAGGC
GATATGGGTGATGCTCACGTTGGGCTGCAAGCGCGGTTAATGAGCCAAGCCTTACGTAAAATTACTGGCAACATTGGTAA
ATCCGGTTGTACAGTAATTTTCATCAACCAGTTACGCCAAAAAATCGGTGTTACCTACGGTAGTCCAGAAACCACAACTG
GCGGTAATGCATTGAAGTTTTACGCTTCTGTGCGCTTGGATATTCGCCGAATTCAAACCTTGAAGAAAGGCACAGATGAA
TTTGGTAACCGTGTGAAAGTTAAAGTTGCTAAAAATAAAGTAGCGCCACCTTTTAGAATCGCGGAATTCGATATTATTTT
TGGTAAAGGTATTTCTACGTTGGGTTGTCTTGTTGACCTAGCAGAAGAAACTGGCATAATTATCCGCAAAGGAGCTTGGT
ACAGCTACAATGGCGATAATATCTCCCAAGGTCGAGATAATGCTATTAAGTATCTAGAAGAAAAGCCTGAATTTGCCGAA
CAAATTAAGCAACTTGTTAGAGAAAAGCTAGATAAAGGTGCAGTTGTTTCTGCTAATTCTGTAGCGAAGACCAGCGAAGA
TGAAGAGGAAGAAGAAATGGATTTAGAGCCAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.506

96.936

0.616
  recA Acinetobacter baylyi ADP1

63.689

96.657

0.616
  recA Pseudomonas stutzeri DSM 10701

64.671

93.036

0.602
  recA Helicobacter pylori 26695

58.989

99.164

0.585
  recA Helicobacter pylori strain NCTC11637

58.989

99.164

0.585
  recA Ralstonia pseudosolanacearum GMI1000

64.615

90.529

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.479

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.974

97.772

0.577
  recA Vibrio cholerae strain A1552

58.974

97.772

0.577
  recA Streptococcus mutans UA159

59.366

96.657

0.574
  recA Glaesserella parasuis strain SC1401

59.195

96.936

0.574
  recA Neisseria gonorrhoeae strain FA1090

64.062

89.136

0.571
  recA Neisseria gonorrhoeae MS11

64.062

89.136

0.571
  recA Neisseria gonorrhoeae MS11

64.062

89.136

0.571
  recA Streptococcus pneumoniae TIGR4

57.746

98.886

0.571
  recA Streptococcus pneumoniae Rx1

57.746

98.886

0.571
  recA Streptococcus pneumoniae D39

57.746

98.886

0.571
  recA Streptococcus pneumoniae R6

57.746

98.886

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.551

96.1

0.563
  recA Streptococcus pyogenes NZ131

57.224

98.329

0.563
  recA Streptococcus mitis NCTC 12261

57.849

95.822

0.554
  recA Streptococcus mitis SK321

57.849

95.822

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

62.382

88.858

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

91.365

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.752

89.972

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.201

0.529

Multiple sequence alignment