Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFS0M_RS05885 Genome accession   NZ_CP170911
Coordinates   1168572..1169630 (+) Length   352 a.a.
NCBI ID   WP_002914769.1    Uniprot ID   A0A0H3GS46
Organism   Klebsiella pneumoniae strain 2016C06-059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1163572..1174630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFS0M_RS05860 (ACFS0M_05860) mltB 1163970..1165049 (+) 1080 WP_004174694.1 lytic murein transglycosylase B -
  ACFS0M_RS05865 (ACFS0M_05865) - 1165388..1166098 (+) 711 WP_004217109.1 metal ABC transporter ATP-binding protein -
  ACFS0M_RS05870 (ACFS0M_05870) - 1166095..1166958 (+) 864 WP_002914775.1 metal ABC transporter permease -
  ACFS0M_RS05875 (ACFS0M_05875) - 1166966..1167844 (+) 879 WP_002914773.1 metal ABC transporter substrate-binding protein -
  ACFS0M_RS05880 (ACFS0M_05880) pncC 1167984..1168481 (+) 498 WP_002914771.1 nicotinamide-nucleotide amidase -
  ACFS0M_RS05885 (ACFS0M_05885) recA 1168572..1169630 (+) 1059 WP_002914769.1 recombinase RecA Machinery gene
  ACFS0M_RS05890 (ACFS0M_05890) recX 1169698..1170198 (+) 501 WP_002914767.1 recombination regulator RecX -
  ACFS0M_RS05895 (ACFS0M_05895) alaS 1170449..1173076 (+) 2628 WP_002914765.1 alanine--tRNA ligase -
  ACFS0M_RS05900 (ACFS0M_05900) csrA 1173440..1173625 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37923.36 Da        Isoelectric Point: 4.8095

>NTDB_id=1059664 ACFS0M_RS05885 WP_002914769.1 1168572..1169630(+) (recA) [Klebsiella pneumoniae strain 2016C06-059]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAITWLKENPAAAKEI
EKKVRELLLNNQDAKPDFVVDGNDAEETEQDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1059664 ACFS0M_RS05885 WP_002914769.1 1168572..1169630(+) (recA) [Klebsiella pneumoniae strain 2016C06-059]
ATGGCGATCGACGAAAACAAACAGAAAGCGTTGGCGGCTGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCACCATGGATGTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCG
CCGGCGGTCTGCCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGACGCTGCAGGTT
ATCGCCGCAGCGCAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCTGAACATGCGCTGGATCCGGTCTATGCACGCAA
ACTGGGCGTCGATATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGG
CGCGCTCCGGCGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTTATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAAGAGGGCGACAACGTCGTCGGC
AGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCCGCGCCGTTTAAACAGGCCGAATTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTACGGCGAGCTGGTAGACCTCGGCGTAAAAGAGAAGCTGATTGAGAAAGCGGGTGCCTGGTATAGCT
ACAACGGCGACAAAATCGGTCAGGGTAAAGCGAACGCGATCACCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAAGTGCGCGAACTGCTGCTCAACAATCAGGATGCGAAGCCAGACTTCGTTGTTGACGGCAACGACGCAGAAGA
AACCGAACAGGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GS46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

94.034

0.798
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

94.034

0.798
  recA Pseudomonas stutzeri DSM 10701

74.184

95.739

0.71
  recA Acinetobacter baumannii D1279779

75.229

92.898

0.699
  recA Acinetobacter baylyi ADP1

74.695

93.182

0.696
  recA Glaesserella parasuis strain SC1401

68.946

99.716

0.688
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Helicobacter pylori strain NCTC11637

61.424

95.739

0.588
  recA Streptococcus mitis SK321

59.312

99.148

0.588
  recA Helicobacter pylori 26695

61.128

95.739

0.585
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

92.045

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.318

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment