Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACF3DV_RS06955 Genome accession   NZ_CP170743
Coordinates   1618210..1619289 (+) Length   359 a.a.
NCBI ID   WP_016876395.1    Uniprot ID   A0A433N5H5
Organism   Chlorogloeopsis fritschii PCC 9212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613210..1624289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3DV_RS06935 (ACF3DV_06935) - 1613422..1613850 (+) 429 WP_016876391.1 GNAT family N-acetyltransferase -
  ACF3DV_RS06940 (ACF3DV_06940) - 1613966..1615387 (+) 1422 WP_016876392.1 hypothetical protein -
  ACF3DV_RS06945 (ACF3DV_06945) - 1615730..1616377 (+) 648 WP_016876393.1 Coq4 family protein -
  ACF3DV_RS06950 (ACF3DV_06950) - 1617122..1618078 (+) 957 WP_016876394.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ACF3DV_RS06955 (ACF3DV_06955) recA 1618210..1619289 (+) 1080 WP_016876395.1 recombinase RecA Machinery gene
  ACF3DV_RS06960 (ACF3DV_06960) - 1619501..1620388 (-) 888 WP_016876396.1 alpha/beta fold hydrolase -
  ACF3DV_RS06965 (ACF3DV_06965) - 1620655..1620972 (+) 318 WP_016876397.1 carbon dioxide-concentrating mechanism protein CcmK -
  ACF3DV_RS06970 (ACF3DV_06970) - 1621112..1621462 (+) 351 WP_016876398.1 carbon dioxide-concentrating mechanism protein CcmK -
  ACF3DV_RS06975 (ACF3DV_06975) - 1622239..1623426 (+) 1188 WP_016876399.1 HetZ-related protein 2 -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38743.04 Da        Isoelectric Point: 4.9024

>NTDB_id=1059106 ACF3DV_RS06955 WP_016876395.1 1618210..1619289(+) (recA) [Chlorogloeopsis fritschii PCC 9212]
MAVNTDNAGKQKALNMVLNQIERTFGKGTIMRLGDATRMRVETIPSGALTLDLALGGGLPKGRVIEIYGPESSGKTTLAL
HAVAEVQKNGGIAAYVDAEHALDPTYAGALGVDIENLLVSQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
EMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKYYASVRLDIRRIQTLKKGSEE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCLVDLAEETGILTRKGAWYSYNGDNISQGRDNAIKYLEEKTEFAE
QIKQLVREKLEMGAVVSANSVRKTSEDDEEDIEDYSEEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1059106 ACF3DV_RS06955 WP_016876395.1 1618210..1619289(+) (recA) [Chlorogloeopsis fritschii PCC 9212]
ATGGCTGTTAATACTGATAATGCTGGCAAGCAAAAAGCGCTCAACATGGTACTGAACCAGATTGAGCGTACTTTTGGCAA
AGGAACAATCATGCGCTTGGGCGATGCTACCCGGATGCGAGTAGAGACTATTCCCAGTGGGGCGCTAACTCTGGATCTGG
CGTTAGGTGGTGGTTTACCCAAAGGACGGGTGATTGAAATTTATGGGCCGGAAAGTTCCGGTAAGACGACACTCGCGCTA
CATGCGGTGGCAGAAGTACAAAAAAATGGTGGTATTGCTGCTTATGTAGATGCAGAACACGCTCTAGATCCTACCTACGC
TGGAGCTTTGGGTGTTGATATCGAAAATTTGCTAGTTTCTCAACCAGACACTGGAGAAGCGGCTTTAGAAATAGTCGATC
AGCTGGTTCGCTCTGCTGCGGTTGACATTGTAGTCATTGACTCAGTGGCAGCACTAGTTCCCCGTGCTGAAATTGAAGGC
GAAATGGGTGATGCTCACGTTGGTCTTCAGGCAAGATTGATGAGCCAAGCTCTACGTAAAATTACTGGTAATATTGGTAA
ATCTGGCTGCACAGTTATTTTTCTCAACCAGTTGCGGCAAAAAATTGGTGTCACCTATGGCAACCCAGAAACAACCACTG
GTGGTAACGCCTTAAAATATTACGCTTCTGTACGCTTGGATATTCGCCGGATTCAAACCCTCAAAAAAGGCTCGGAAGAA
TTTGGTAACCGCGTCAAAGTCAAAGTTGCTAAAAATAAAGTTGCACCACCTTTTAGAATTGCTGAATTTGACATTATTTT
TGGTAAGGGTATCTCTACCTTAGGCTGTCTTGTAGATTTAGCAGAGGAAACTGGCATACTTACACGCAAAGGAGCCTGGT
ATAGCTACAACGGTGATAATATCTCCCAAGGTCGCGATAACGCGATTAAGTATCTAGAAGAAAAAACAGAATTTGCTGAA
CAAATTAAGCAGCTGGTACGGGAAAAACTAGAAATGGGAGCAGTTGTTTCTGCTAACTCTGTAAGAAAAACTAGCGAAGA
CGACGAAGAAGATATTGAAGATTATTCTGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N5H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

62.5

95.822

0.599
  recA Pseudomonas stutzeri DSM 10701

62.099

95.543

0.593
  recA Acinetobacter baylyi ADP1

65.528

89.694

0.588
  recA Ralstonia pseudosolanacearum GMI1000

64.22

91.086

0.585
  recA Glaesserella parasuis strain SC1401

58.192

98.607

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

57.955

98.05

0.568
  recA Neisseria gonorrhoeae strain FA1090

62.813

89.136

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

89.136

0.56
  recA Neisseria gonorrhoeae MS11

62.813

89.136

0.56
  recA Neisseria gonorrhoeae MS11

62.813

89.136

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.48

95.265

0.557
  recA Helicobacter pylori strain NCTC11637

59.94

92.479

0.554
  recA Helicobacter pylori 26695

59.94

92.479

0.554
  recA Streptococcus pneumoniae Rx1

55.742

99.443

0.554
  recA Streptococcus pneumoniae TIGR4

55.742

99.443

0.554
  recA Streptococcus pneumoniae R6

55.742

99.443

0.554
  recA Streptococcus pneumoniae D39

55.742

99.443

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

92.479

0.552
  recA Vibrio cholerae strain A1552

61.491

89.694

0.552
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

89.694

0.552
  recA Streptococcus mutans UA159

56.069

96.379

0.54
  recA Streptococcus mitis NCTC 12261

54.213

99.164

0.538
  recA Lactococcus lactis subsp. cremoris KW2

58.462

90.529

0.529
  recA Streptococcus mitis SK321

58.462

90.529

0.529
  recA Streptococcus pyogenes NZ131

57.669

90.808

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.522

93.315

0.518

Multiple sequence alignment