Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACE83Q_RS07340 Genome accession   NZ_CP170736
Coordinates   1481027..1482187 (+) Length   386 a.a.
NCBI ID   WP_409022062.1    Uniprot ID   -
Organism   Dellaglioa sp. P0083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476027..1487187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE83Q_RS07315 (ACE83Q_07320) - 1476418..1477089 (+) 672 Protein_1383 N-acetylmannosamine-6-phosphate 2-epimerase -
  ACE83Q_RS07320 (ACE83Q_07325) - 1477291..1477872 (+) 582 WP_409022058.1 sugar O-acetyltransferase -
  ACE83Q_RS07325 (ACE83Q_07330) - 1478095..1479672 (+) 1578 WP_409022059.1 BCCT family transporter -
  ACE83Q_RS07330 (ACE83Q_07335) - 1479912..1480217 (+) 306 WP_409022060.1 rhodanese-like domain-containing protein -
  ACE83Q_RS07335 (ACE83Q_07340) - 1480386..1480811 (+) 426 WP_409022061.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACE83Q_RS07340 (ACE83Q_07345) recA 1481027..1482187 (+) 1161 WP_409022062.1 recombinase RecA Machinery gene
  ACE83Q_RS07345 (ACE83Q_07350) - 1482299..1482709 (-) 411 WP_409022063.1 hypothetical protein -
  ACE83Q_RS07350 (ACE83Q_07355) - 1482702..1484012 (-) 1311 WP_409022064.1 Y-family DNA polymerase -
  ACE83Q_RS07355 (ACE83Q_07360) - 1484164..1485045 (-) 882 WP_409022065.1 LysR family transcriptional regulator -
  ACE83Q_RS07360 (ACE83Q_07365) - 1485179..1486822 (+) 1644 WP_409022836.1 malolactic enzyme -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 41163.02 Da        Isoelectric Point: 5.1182

>NTDB_id=1059017 ACE83Q_RS07340 WP_409022062.1 1481027..1482187(+) (recA) [Dellaglioa sp. P0083]
MANRSIATGDGKRKDGKEREAALEKALSAITKEFGQGAIMKMGDKADTKIDVTSTGILSLDYALGVGGFPKGRIVEIYGP
ESSGKTTIALHATAEVQKNGGTVAYIDAENAMDPAYATALGVDIDGLLLSQPDTGEQGLEIADALVSSGAVDLVVIDSVA
ALVPRAEIEGEMGDAHVGLQARMMSQALRKLAGSINKTRTTVIFINQLREKVGVMFGSPETTPGGRALKFYATIRLDVRR
RGQIKDGTDVIGNETTIKVVKNKVAPPFKIAELNMMYGSGISATADILDLAVENGIAEKAGSWFSYHGERLGQGKPNVVN
ILEQKPDMLHDMDQEVRAKIFAPDEEPVKEVKEETAAPKKTTKKVKKADDAPVLDSKIETLDLPEA

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=1059017 ACE83Q_RS07340 WP_409022062.1 1481027..1482187(+) (recA) [Dellaglioa sp. P0083]
ATGGCTAACAGAAGTATTGCAACCGGAGACGGCAAAAGAAAAGACGGTAAAGAACGCGAAGCAGCACTAGAAAAAGCGTT
ATCAGCAATTACAAAAGAATTCGGACAAGGTGCCATTATGAAGATGGGGGACAAAGCCGACACGAAGATTGATGTTACTT
CAACTGGTATTTTATCGTTGGATTACGCATTAGGAGTTGGTGGTTTTCCTAAAGGCCGTATTGTTGAAATATACGGACCA
GAAAGTTCTGGTAAAACAACAATTGCACTTCATGCAACAGCAGAAGTCCAAAAAAATGGTGGTACAGTTGCTTATATCGA
TGCTGAAAATGCCATGGATCCCGCATATGCAACAGCATTAGGTGTTGATATTGATGGATTACTATTATCACAACCAGATA
CTGGTGAACAAGGATTAGAAATTGCAGATGCTTTGGTATCCAGTGGTGCCGTTGATCTTGTCGTTATTGATTCAGTTGCA
GCTTTAGTTCCTCGTGCAGAAATTGAAGGCGAAATGGGTGACGCTCATGTTGGGTTACAAGCTCGTATGATGTCACAAGC
TCTCCGTAAATTGGCTGGTTCAATCAACAAAACAAGAACAACTGTTATTTTTATTAATCAATTACGTGAAAAAGTTGGTG
TCATGTTTGGTAGTCCTGAAACAACACCAGGTGGCCGTGCTTTAAAATTCTACGCAACAATTCGTTTAGACGTTCGTCGT
CGTGGACAAATTAAAGATGGTACGGATGTTATTGGTAATGAAACAACCATTAAAGTTGTTAAAAATAAAGTAGCGCCACC
ATTTAAAATTGCTGAATTAAACATGATGTACGGATCAGGTATCTCAGCTACTGCTGATATCTTAGATCTTGCTGTTGAAA
ATGGTATCGCTGAAAAAGCTGGGTCATGGTTCTCATACCATGGCGAACGTTTAGGTCAAGGTAAACCAAATGTTGTTAAT
ATTTTGGAACAAAAACCTGATATGTTACATGATATGGACCAAGAAGTTCGTGCAAAAATATTTGCACCTGATGAAGAACC
AGTCAAAGAAGTTAAAGAAGAAACAGCAGCACCAAAGAAAACAACTAAAAAAGTTAAAAAAGCTGACGATGCTCCAGTGT
TAGATTCAAAAATCGAAACATTAGATTTACCAGAAGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

67.042

91.969

0.617
  recA Streptococcus mutans UA159

60.484

96.373

0.583
  recA Streptococcus pneumoniae D39

61.308

95.078

0.583
  recA Streptococcus pneumoniae Rx1

61.308

95.078

0.583
  recA Streptococcus pneumoniae R6

61.308

95.078

0.583
  recA Streptococcus pneumoniae TIGR4

61.308

95.078

0.583
  recA Streptococcus mitis NCTC 12261

63.324

90.415

0.573
  recA Streptococcus mitis SK321

63.037

90.415

0.57
  recA Lactococcus lactis subsp. cremoris KW2

65.165

86.269

0.562
  recA Streptococcus pyogenes NZ131

65.06

86.01

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

65.312

82.902

0.541
  recA Ralstonia pseudosolanacearum GMI1000

63.023

80.57

0.508
  recA Acinetobacter baylyi ADP1

57.988

87.565

0.508
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.271

85.233

0.505
  recA Pseudomonas stutzeri DSM 10701

59.692

84.197

0.503
  recA Neisseria gonorrhoeae MS11

62.258

80.311

0.5
  recA Neisseria gonorrhoeae strain FA1090

62.258

80.311

0.5
  recA Neisseria gonorrhoeae MS11

62.258

80.311

0.5
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.308

85.751

0.5
  recA Glaesserella parasuis strain SC1401

58.896

84.456

0.497
  recA Acinetobacter baumannii D1279779

56.213

87.565

0.492
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.362

84.456

0.484
  recA Vibrio cholerae strain A1552

57.362

84.456

0.484
  recA Helicobacter pylori 26695

53.353

88.86

0.474
  recA Helicobacter pylori strain NCTC11637

53.353

88.86

0.474
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.015

85.233

0.469

Multiple sequence alignment